==== Phlog archive ================================================

	==== Phlog archive ================================================

	Back to home

	- Planning cycle routes in Washington DC
	- Gathering data on plant growth form for a regional species
	- Job talk for GEO-TREES post-doc
	- Leaf trait sampling protocol for SECO
	- Comparison of Mo et al. (2024) global wood density with
	- GPX files for Edinburgh cycle loops
	- Bash script to download audio from Youtube
	- R function to extract raster data
	- Processing bike ride data from Fitotrack Android app
	- Converting stem locations from lat-long to XY coordinates
	- An email about resprouting in the SEOSAW database
	- Definitions of drylands
	- Methods to establish square vegetation monitoring plots
	- Raspberry Pi home server
	- Scraping plot locations from the ForestPlots.net web map
	- tmux grouped sessions
	- SEOSAW growth rates workshop
	- Refurbishing my bike
	- Excel Scottish Land Tax calculator
	- Geo-referenced Teixeira (1968) Bicuar National Park
	- An email about estimating productivity
	- R functions to download data from KoboToolbox
	- Vegetation map of Bicuar National Park - Teixeira 1968
	- Presentations for lectureship interview
	- Blog post on fieldwork in Ongava Game Reserve
	- Importing data layers into Avenza Maps Android app
	- Yoga routine for fieldwork
	- Fieldwork in Ongava Game Reserve
	- Fieldwork bumbag
	- Command line tools I'd like to use but can't
	- Shell script to extract colours from macOS Terminal.app
	- R function to find nearest named colour
	- CMUS colour scheme and persistent settings
	- Cider making
	- `BIOMASS::getWoodDensity()` description
	- Low bandwidth radio
	- Shiny app to explore climate space of SEOSAW region
	- Comparing coordinates of tree stems collected with GPS or
	- Tracking meals for a year
	- Using `any()` with `ifelse()` and `group_by()`
	- Todo lists in Vim, syntax highlighting
	- PhD thesis
	- Voronoi tessellation to measure tree spatial distribution
	- Starting a repeat census of the New Wood
	- Guide for analysing forest canopy photos
	- Measuring stick for DBH measurements
	- Fieldwork in Namibia
	- Building adjustable tree mounts for camera traps
	- Thoughts on setting up permanent vegetation monitoring plots
	- Omajowa mushrooms
	- Ecology projects and acronyms
	- Food on New Year's Eve
	- Atom notebooks
	- Making bark thickness punches
	- Pros and cons of conducting ecological fieldwork with ODK
	- Processing data from the TRY traits database
	- Why big square vegetation plots are best
	- First setup for nvim-lsp with nvim-cmp
	- SEOSAW plot metadata Shiny app
	- Minimum bounding rectangles around sf polygons in R
	- Extracting pages with colour from a PDF
	- New website
	- Walking three days of the Cleveland Way
	- Mulching trees to stop grass growth
	- Display lots of points with tiles in ggplot2
	- Data management during and after my PhD
	- PhD keyboard
	- Sensible page breaks in LaTeX grouped longtables
	- Collecting qualitative colour palettes
	- Flowering Aechmea fasciata
	- Grabbing BibTeX from a DOI
	- siunitx 'S' table column 'table-format' option
	- Diagrams to explain niche complementarity
	- BibLaTeX reference formatting
	- tmux popup windows for quickly launching scripts
	- Scraping museum catalogues
	- Network graph of R package usage
	- Interview presentation for SECO post-doc position
	- ASCII/UTF8 terrestrial carbon cycle diagram
	- A blog post on the Edinburgh Teaching Award
	- Diagrams to summarise Biodiversity - Ecosystem Function
	- compInd: An R package for forest tree-tree competition
	- Using nnn.vim as a filepicker for neomutt attachments
	- Calculating the winkelmass in R
	- FZF in vim and bash
	- ASCII charts in R
	- Polygon SVG diagrams
	- Pretty pictures from Terrestrial LiDAR
	- Reading on disc pasture meters
	- Empirical Cumulative Density Function (ECDF) plots
	- Learning Julia
	- Flatbreads
	- Modelling stem diameter class distribution with Weibull
	- Planting 10 acres of woodland
	- Splitting a large woodland survey plot into 1 ha subdivisions
	- Fixing a stool
	- RSS feeds for scientific journals
	- Microsoft Azure Translator API call in R
	- LaTeX plot census forms
	- Making sense of the ODK ecosystem
	- Dynamic lists from user-added choices within repeats and
	- What XLSForm+ODK cannot do
	- Playfair cipher in R
	- Estimating grassy volume from terrestrial LiDAR
	- Pandoc LaTeX shopping list template
	- Estimating canopy rugosity from terrestrial LiDAR
	- Extracting a vertical height profile from terrestrial LiDAR
	- Measuring canopy gap fraction from point clouds
	- Processing Terrestrial LiDAR with PDAL
	- Tiling wallpapers
	- Writing legibly in a field notebook
	- Querying the SoilGrids REST API
	- Making abundance matrices
	- Random effects plots
	- Scripting qutebrowser to grab papers with scidownl
	- Propagating basil
	- Comparing which simulated distribution is closest to the
	- Making a LaTeX thesis template
	- Making playlists for cmus
	- Display line segments with given slope in ggplot2
	- Sort and filter .bib files
	- Email about estimating competition with basal area
	- Curl-able contact card
	- Exporting draw.io images to LaTeX
	- How I cast Youtube videos to the TV
	- A weekend of consultations on woodland planting
	- Pretty correlation matrices with ggplot
	- Vim HTML img tag to markdown
	- Questions about operational IT for research
	- FZF script for searching a lookup table
	- Flow diagram for data cleaning process
	- An R function to split species names
	- Writing R package documentation
	- An email which tries to make sense of the RMarkdown ecosystem
	- Adventures in tweaking RMarkdown
	- Rendering list structure in R
	- Snippets to tweak macOS Finder.app
	- Thoughts on the publication process
	- Shiny app to visualise scaled planetary orbits on world map
	- Compiling a single master.tex from a modular document
	- Waiting for permits
	- Kit list for tropical fieldwork
	- Comparison of F-droid notetaking apps on Android
	- Too many software options for group working
	- Shell script for internet radio
	- Low bandwidth internet browsing
	- My vimdiff setup
	- Track changes in LaTeX for reviewer comments
	- Charging the laser scanner off a generator
	- Attaching threaded bar to rebar
	- Automate CSV typesetting for plot data sheets
	- An email about ordination and environmental fits
	- R functions for creating LaTeX variables
	- Workflow for writing an academic paper
	- Constructing diversity profiles with Hill numbers
	- Creating a personal library catalogue
	- Making a Gopherhole
	- Making better ggiNEXT plots
	- Making a LaTeX Beamer template
	- Shell script to get wifi password in macOS
	- UltiSnips cheatsheet
	- urlview to easily handle URLs in the terminal
	- Scraping instagram without an account
	- Writing ggplot2 grobs in a loop to maintain data values
	- A Pandoc template for converting markdown letters to LaTeX
	- Custom .sty files in LaTeX
	- Miscellaneous LaTeX snippets
	- Notes on Poisson regression
	- Analysing BibTeX files in R
	- Notes on diversity indices
	- My spot in Summer
	- Writing non-standard notation in ggplot2
	- Writing a Makefile for LaTeX and R
	- Customising plots drawn to estimate pairwise marginal means
	- Vim fold expression for BibTeX files
	- Making lists
	- Plotting a semi-variogram fit in ggplot2
	- Marking laser scanning targets to aid processing
	- An email about setting up one hectare plots
	- Compressing images for this website
	- Fetching mail with offlineimap within Mutt
	- The Mackenzie Dendrometer
	- Hotter than average map
	- Poster for Postgraduate Research Conference
	- Talk at Remote Sensing of Vegetation meeting
	- Task management macros in Vim
	- Fewer geocaches
	- Plain text data entry in the terminal
	- Managing receipts on fieldwork
	- Edinburgh Teaching Award
	- Taking notes in the field
	- A 20 cm measuring stick
	- Thoughts on natural surroundings in Bicuar National Park
	- Angolan matchbox designs
	- Fermented drinks and exotic food in Huila province Angola
	- Ubuntu network timeout
	- DIY disc pasture meter in action
	- Exporting a list of R packages to install on a new machine
	- Python conda virtual environment in bash prompt
	- Making inset maps for publication
	- Using vifm to attach files to emails in Mutt
	- DIY disc pasture meter
	- Using the LaTeX 'float' package with Pandoc
	- Diagrams for tree measurements
	- Weekend walk on the Southern Upland Way and John Muir Link
	- Using notmuch to search email in Mutt
	- Putting a Linux distro on a USB, from a Mac
	- Converting Alpine addressbook to Mutt aliases
	- Updated Mutt config, multiple accounts
	- Calculating Vapour Pressure Deficit and other atmospheric
	- Converting Qutebrowser bookmarks to w3m bookmarks
	- A better system for referencing
	- Calculating NDVI from Sentinel 2 images for Bicuar National
	- How much miombo is in each country
	- Making cider, bottling update
	- My spot in the woods in Autumn
	- Fixing up an Emmelle Diamond 5 bike
	- What I carry in my bag everyday
	- An R function to fill abbreviated genus names in a list of
	- I made a mistake with cropping fisheye photos to a field of
	- Hemispherical photography - should the focus be set to
	- Comparing forest canopy measurements with a phone lens and
	- Making Cider
	- Update on plant growth
	- Figuring out Sums of Squares in ANOVA
	- A method to crop hemispherical images to a field of view
	- A guide about processing hemispherical photos
	- An email about hemispherical photography
	- Ideas for a DIY bike chain tensioner
	- Foraging Chicken of the Woods
	- Pandoc CSS templates
	- Spoon carving trees in the SEOSAW network
	- Converting a bank .csv statement to ledger
	- Qutebrowser setup
	- VLC from the command line on macOS
	- Generating a static site using pandoc
	- Rebuilding a bike
	- Gmail on macOS command line: neomutt + offlineimap + notmuch
	- Making a minimal wallet
	- Making a chopping board
	- Making arty renders of Belize's rivers
	- Updating pypodd to download most recent
	- Knife wear and tear
	- Hammock setup
	- Foraging and making wild garlic pesto
	- Converting stem locations in a square plot to X Y metre
	- Mapping GPX tracks from AAT for Android, in R
	- A workshop on Git for version control
	- Making a geoJSON powered Leaflet map
	- New hemispherical photography equipment
	- Dirty Weekenders Kitchen Table Talk
	- Updating pypodd to run .opml files
	- Kalanchoe propagation
	- I made a command line podcast grabber in Python
	- Spring woodworking in my spot
	- How many trees have I measured?
	- Grievances with email clients and the state of email usage
	- Expedition food
	- How to properly roll and store DBH tape measure
	- Replacing the lightline.vim plugin with a custom
	- What are the possible uses for local webpages in a shared
	- Elephants affect the spatial distribution of savannah trees
	- Producing Gitbooks
	- Methods of writing and collaboration
	- My workflow, tmux, vim, etc.
	- Cycling from Bridge of Allan to Blackford
	- Initial PhD ideas
	- Automating imageJ leaf area processing
	- Using R to locate spatial data points inside map polygons
	- Making Coding Club logos in R
	- Reconditioning an old axe
	- Walking the Great Glen Way
	- Visualising Survey Data with Likert Scales
	- Brewing plum wine
	- Making Logos for Coding Club
	- Growing micro-greens on cotton wool
	- Mapping The Vegetation and Climate of Africa in R
	- Analysing Ledger Personal Accounting Data Using R
	- Fire experiments in the Congo
	- Constructing a Useful Bash Prompt
	- Configuring Ranger, a File Manager for macOS, with rifle.conf
	- Interpretation panel at Roslin Glen