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Post AlpcCrDFsKAvDVm6O8 by [email protected] |
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Post #Alo2bKVunNnXXBufqq by [email protected] |
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What is it about bioinformatics workflows that causes most practitioners to tre… |
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Post #Alo2ycwQRr0HLZQEeO by [email protected] |
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I kid you not, here are two examples from two separate researchers:...trinity_o… |
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Post #Alo6qe8KX3YWXmRMhs by [email protected] |
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@AlanSill At least the first one is a temp dir of almost no further use, you se… |
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Post #Alo6qeF480wYsfakCm by [email protected] |
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@tyx SQLite is *FAST*, much faster than parsing file systems for zillions of fi… |
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Post #AloA9WdiuvyQfQon7Q by [email protected] |
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@AlanSill I have no visibility on the bioinformatics context, but in general ma… |
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Post #AloAqEJkujOeIJqEd6 by [email protected] |
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@AlanSill Some of the programs being used in the workflow may not support readi… |
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Post #AloKEsMGaxeb10qJoO by [email protected] |
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@AlanSill @rupdecat >SQLite is *FAST*Optimization is cool. Only when you nee… |
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Post #AloKEsT0Bv2dLtzhJI by [email protected] |
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@tyx @rupdecat Thanks! I see the reasons but this still seems like a shift of c… |
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Post #AlpcCrDFsKAvDVm6O8 by [email protected] |
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@AlanSill How big is one file in average? How is the data structured? Alternati… |
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Post #Alpqwb9rIV5M6RtKMa by [email protected] |
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@jan That's part of my frustration - mostly these seem to be little files a… |
