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	tAdded thin-section visualization method - sphere - GPU-based 3D discrete eleme…
	git clone git://src.adamsgaard.dk/sphere
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	---
	commit efc573bf0e26854a149080670227281e4480bb72
	parent 6db1e3d5a77e6c1b2532bb02fd07e77892904145
	Author: Anders Damsgaard <[email protected]>
	Date: Thu, 10 Jan 2013 13:01:56 +0100

	Added thin-section visualization method

	Diffstat:
	A gnuplot/scripts/plotts.gp \| 19 +++++++++++++++++++
	M python/sphere.py \| 10 +++++-----

	2 files changed, 24 insertions(+), 5 deletions(-)
	---
	diff --git a/gnuplot/scripts/plotts.gp b/gnuplot/scripts/plotts.gp
	t@@ -0,0 +1,19 @@
	+#!/usr/bin/env gnuplot
	+# Call this script with sid and gamma variables, e.g.
	+# $ gnuplot -e "sid='testrun'; gamma='4.3" plotts.gp
	+
	+set title sid.", $\\gamma$ = ".gamma
	+
	+set term pngcairo size 50 cm,40 cm
	+set out "../../img_out/".sid."-ts-x1x3.png"
	+
	+set palette defined (0 "blue", 0.5 "gray", 1 "red")
	+
	+set xlabel "$\\x^1$"
	+set ylabel "$\\x^3$"
	+set cblabel "Pressure [Pa]"
	+
	+set size ratio -1
	+
	+plot "../data/".sid."-ts-x1x3.txt" with circles palette fs transparent solid 0…
	+
	diff --git a/python/sphere.py b/python/sphere.py
	t@@ -1118,7 +1118,7 @@ class Spherebin:
	print("Value limited to: " + str(cbmax) + " Pa")

	# Save circle data
	- filename = '../gnuplot/data' + self.sid + '-ts-x1x3.txt'
	+ filename = '../gnuplot/data/' + self.sid + '-ts-x1x3.txt'
	fh = None
	try :
	fh = open(filename, 'w')
	t@@ -1133,7 +1133,7 @@ class Spherebin:
	# Save angular velocity data. The arrow lengths are normalized to max.…
	# Output format: x, y, deltax, deltay
	# gnuplot> plot '-' using 1:2:3:4 with vectors head filled lt 2
	- filename = '../gnuplot/data' + self.sid + '-ts-x1x3-arrows.txt'
	+ filename = '../gnuplot/data/' + self.sid + '-ts-x1x3-arrows.txt'
	fh = None
	try :
	fh = open(filename, 'w')
	t@@ -1208,7 +1208,7 @@ class Spherebin:


	# Write slip lines to text file
	- filename = '../gnuplot/data' + self.sid + '-ts-x1x3-slips.txt'
	+ filename = '../gnuplot/data/' + self.sid + '-ts-x1x3-slips.txt'
	fh = None
	try :
	fh = open(filename, 'w')
	t@@ -1222,7 +1222,7 @@ class Spherebin:

	# Plot thinsection with gnuplot script
	gamma = self.shearstrain()
	- subprocess.call("""gnuplot -e "sid='{}'; gamma='{:.3}'" ../gnuplot/scr…
	+ subprocess.call("""cd ../gnuplot/scripts && gnuplot -e "sid='{}'; gamm…

	# Find all particles who have a slip velocity higher than slipvel
	slipvellimit = 0.01
	t@@ -1243,7 +1243,7 @@ class Spherebin:
	fig = plt.figure()
	ax = fig.add_subplot(111, polar=True)
	ax.bar(center_ang_mirr, hist_ang_mirr, width=30.0/180.0)
	- fig.savefig('../gnuplot/data' + self.sid + '-ts-x1x3-slipangles.png')
	+ fig.savefig('../img_out/' + self.sid + '-ts-x1x3-slipangles.png')
	fig.clf()