 |
tadded job script generating function for Penguin Computing - sphere - GPU-base… |
 |
git clone git://src.adamsgaard.dk/sphere |
 |
Log |
|
Files |
|
Refs |
|
LICENSE |
|
--- |
|
commit 782ab30d3a9320b25581637664f1fdb0ca0d3844 |
|
parent ea1a476542b8adc0da33a38eba71a93cb6822d7c |
|
Author: Anders Damsgaard <[email protected]> |
|
Date: Wed, 3 Sep 2014 09:56:33 +0200 |
|
|
|
added job script generating function for Penguin Computing |
|
|
|
Diffstat: |
|
M python/sphere.py | 66 +++++++++++++++++++++++++++++… |
|
|
|
1 file changed, 66 insertions(+), 0 deletions(-) |
|
--- |
|
diff --git a/python/sphere.py b/python/sphere.py |
|
t@@ -3376,6 +3376,72 @@ class sim: |
|
if fh is not None: |
|
fh.close() |
|
|
|
+ def torqueScriptPenguin(self, |
|
+ email='[email protected]', |
|
+ email_alerts='ae', |
|
+ walltime='1920:00:00', |
|
+ queue='H30G', |
|
+ spheredir='/home/adc/code/sphere'): |
|
+ ''' |
|
+ Creates a job script for the Torque queue manager for the simulation |
|
+ object. |
|
+ |
|
+ :param email: The e-mail address that Torque messages should be sent to |
|
+ :type email: str |
|
+ :param email_alerts: The type of Torque messages to send to the e-mail |
|
+ address. The character 'b' causes a mail to be sent when the |
|
+ execution begins. The character 'e' causes a mail to be sent when |
|
+ the execution ends normally. The character 'a' causes a mail to be |
|
+ sent if the execution ends abnormally. The characters can be writt… |
|
+ in any order. |
|
+ :type email_alerts: str |
|
+ :param walltime: The maximal allowed time for the job, in the format |
|
+ 'HH:MM:SS'. |
|
+ :type walltime: str |
|
+ :param queue: The Torque queue to schedule the job for |
|
+ :type queue: str |
|
+ :param spheredir: The path to the root directory of sphere on the |
|
+ cluster |
|
+ :type spheredir: str |
|
+ ''' |
|
+ |
|
+ self.writebin() |
|
+ filename = self.sid + ".sh" |
|
+ fh = None |
|
+ try : |
|
+ fh = open(filename, "w") |
|
+ |
|
+ fh.write('#!/bin/sh\n') |
|
+ fh.write('#PBS -S /bin/bash\n') |
|
+ fh.write('#PBS -N ' + self.sid + '\n') |
|
+ fh.write('#PBS -l nodes=1:ppn=8\n') |
|
+ fh.write('#PBS -l walltime=' + walltime + '\n') |
|
+ fh.write('#PBS -q ' + queue + '\n') |
|
+ fh.write('#PBS -M ' + email + '\n') |
|
+ fh.write('#PBS -m ' + email_alerts + '\n') |
|
+ fh.write('module load cmake/2.8.11.2\n') |
|
+ fh.write('module load cuda/6.0\n') |
|
+ fh.write('module load python/2.7.4\n') |
|
+ fh.write('module load numpy/1.7.1/python.2.7.4\n') |
|
+ fh.write('module load matplotlib/1.7.1/python.2.7.4\n') |
|
+ fh.write('echo "`whoami`@`hostname`\n') |
|
+ fh.write('echo "Start at `date`\n') |
|
+ fh.write('nvidia-smi\n') |
|
+ fh.write('cd ' + spheredir + '\n') |
|
+ fh.write('rm CMakeCache.txt\n') |
|
+ fh.write('cmake . && make\n') |
|
+ fh.write('./sphere input/' + self.sid + '.bin > /dev/null &\n') |
|
+ fh.write('wait\n') |
|
+ if (use_workdir == True): |
|
+ fh.write('cp $WORKDIR/output/* $ORIGDIR/output/\n') |
|
+ fh.write('echo "End at `date`"\n') |
|
+ |
|
+ print('submit with `qsub ' + filename + '`') |
|
+ |
|
+ finally : |
|
+ if fh is not None: |
|
+ fh.close() |
|
+ |
|
def render(self, |
|
method = "pres", |
|
max_val = 1e3, |
