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	tfix amplitudes, add continue script - sphere - GPU-based 3D discrete element m…
	git clone git://src.adamsgaard.dk/sphere
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	---
	commit 379813ad7fcb70b3647d4026d1764225873cc186
	parent 4b24301021bdd3440e6e47897e728f27c0d00550
	Author: Anders Damsgaard <[email protected]>
	Date: Thu, 23 Apr 2015 18:54:50 +0200

	fix amplitudes, add continue script

	Diffstat:
	A python/wip-varA-cont.sh \| 49 +++++++++++++++++++++++++++++…
	M python/wip-varA.sh \| 6 +++---

	2 files changed, 52 insertions(+), 3 deletions(-)
	---
	diff --git a/python/wip-varA-cont.sh b/python/wip-varA-cont.sh
	t@@ -0,0 +1,49 @@
	+#!/bin/sh
	+#PBS -N wip-varA
	+#PBS -l nodes=1:ppn=3
	+#PBS -l walltime=48:00:00
	+#PBS -q qfermi
	+#PBS -M [email protected]
	+#PBS -m abe
	+
	+# Grendel CUDA
	+source /com/gcc/4.6.4/load.sh
	+CUDAPATH=/com/cuda/5.5.22
	+export PATH=$HOME/bin:$PATH
	+export PATH=$CUDAPATH/bin:$PATH
	+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
	+
	+# Manually installed Python modules
	+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
	+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
	+
	+# Manually installed Python
	+#export PATH=/home/adc/.local/bin:$PATH
	+
	+# Shared Python2.7
	+PYTHON=/com/python/2.7.6
	+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
	+export PATH=$PYTHON/bin:$PATH
	+
	+echo "`whoami`@`hostname`"
	+echo "Start at `date`"
	+
	+ORIGDIR=/home/adc/code/sphere
	+#WORKDIR=/scratch/$PBS_JOBID
	+WORKDIR=$ORIGDIR
	+
	+#cp -r $ORIGDIR/* $WORKDIR
	+
	+cd $WORKDIR
	+nvidia-smi
	+rm CMakeCache.txt
	+cmake . && make
	+cd python
	+python continue_sim.py halfshear-darcy-sigma0=10000.0-k_c=2.0e-16-mu=2.08e-07-…
	+python continue_sim.py halfshear-darcy-sigma0=10000.0-k_c=2.0e-16-mu=2.08e-07-…
	+python continue_sim.py halfshear-darcy-sigma0=10000.0-k_c=2.0e-16-mu=2.08e-07-…
	+wait
	+
	+#cp $WORKDIR/output/* $ORIGDIR/output/
	+
	+echo "End at `date`"
	diff --git a/python/wip-varA.sh b/python/wip-varA.sh
	t@@ -40,9 +40,9 @@ rm CMakeCache.txt
	cmake . && make
	cd python
	# $ ipython halfshear-darcy-stress-starter.py <device> <fluid> <c_phi> <k_c> <…
	-python halfshear-darcy-stress-mod-starter.py 0 1 1.0 2.0e-16 10000.0 2.08e-7 2…
	-python halfshear-darcy-stress-mod-starter.py 1 1 1.0 2.0e-16 10000.0 2.08e-7 2…
	-python halfshear-darcy-stress-mod-starter.py 2 1 1.0 2.0e-16 10000.0 2.08e-7 2…
	+python halfshear-darcy-stress-mod-starter.py 0 1 1.0 2.0e-16 10000.0 2.08e-7 2…
	+python halfshear-darcy-stress-mod-starter.py 1 1 1.0 2.0e-16 10000.0 2.08e-7 2…
	+python halfshear-darcy-stress-mod-starter.py 2 1 1.0 2.0e-16 10000.0 2.08e-7 2…
	wait

	#cp $WORKDIR/output/* $ORIGDIR/output/