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commit 13a00ae713de78e6c1365fc38bf1ff1d1635ddb1
Author: Anders Damsgaard <[email protected]>
Date: Fri, 6 Sep 2019 22:15:58 +0200
First commit
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A getdoi | 141 +++++++++++++++++++++++++++++…
A getref | 170 +++++++++++++++++++++++++++++…
A scholarref | 30 ++++++++++++++++++++++++++++++
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diff --git a/LICENSE b/LICENSE
t@@ -0,0 +1,674 @@
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+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ <program> Copyright (C) <year> <name of author>
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/getdoi b/getdoi
t@@ -0,0 +1,141 @@
+#!/bin/sh
+
+version=1.0
+host="http://api.crossref.org/works"
+
+show_help() {
+ echo "usage: ${0##*/} [OPTIONS] QUERY"
+ echo "will attempt to get the DOI from $host"
+ echo "where QUERY can consist of publication title, author, DOI, ORCID…
+ echo "or a PDF file. In case a file is specified, ${0##*/} will attemp…
+ echo "extract the DOI from it."
+ echo "If no QUERY is specified, this program will expect a QUERY as st…
+ echo
+ echo "OPTIONS are one or more of the following:"
+ echo " -h, --help show this message"
+ echo " -v, --version show version and license information"
+ echo " -V, --verbose show verbose information"
+ echo " -t, --tor-socks use torsocks for HTTP requests"
+ echo " -n, --notify send result as desktop notification"
+ echo " -N, --number NUM return NUM results (default 1)"
+ echo " -c, --clip paste DOI to clipboard (requires xclip)"
+ echo " -o, --open open DOI as url in browser"
+ echo " -- do not consider any following args as opt…
+}
+
+show_version() {
+ echo "${0##*/} version $version"
+ echo "Licensed under the GNU Public License, v3+"
+ echo "written by Anders Damsgaard, [email protected]"
+ echo "https://gitlab.com/admesg/dotfiles"
+}
+
+die() {
+ printf '%s\n' "$1" >&2
+ exit 1
+}
+
+extract_dois() {
+ tr ',' '\n' | grep DOI | \
+ sed 's/.*DOI":"//' | sed 's/"}.*//' | sed 's|\\\/|/|g'
+}
+
+browser_open() {
+ if command -v xdg-open >/dev/null 2>&1; then
+ [ "$verbose" = 1 ] && echo "launching default browser"
+ xdg-open "$1"
+ elif command -v open >/dev/null 2>&1; then
+ [ "$verbose" = 1 ] && echo "launching default browser"
+ open "$1"
+ else
+ die 'Error: could not open a browser'
+ fi
+}
+
+get_doi_from_crossref() {
+ query="$(echo "$@" | sed 's/ /+/g')"
+ url="$host?rows=$number&select=DOI&query=$query"
+ [ "$verbose" = 1 ] && echo "connecting to $url"
+ result=$($prefix curl --header "Accept: application/json" \
+ --header "Content-Type: application/json" \
+ --silent --show-error \
+ --request GET "$url")
+ echo "$result" | extract_dois
+}
+
+get_doi_from_file() {
+ doi=$(pdfinfo "$1" | grep -io "doi.*") ||
+ doi=$(pdftotext "$1" 2>/dev/null - | grep -io "doi.*" -m 1 ) ||
+ die "Error: Could not extract DOI from file $doi"
+ doi=$(echo "$doi" | sed 's/[A-Za-z\.\/:]*//;s/[\.,]$//' |\
+ sed 's/.*\(10\.\)/\1/' | cut -d' ' -f1 | sed 's/,//g')
+ echo "$doi"
+}
+
+get_doi() {
+ if [ -e "$1" ]; then
+ doi=$(get_doi_from_file "$1")
+ else
+ doi=$(get_doi_from_crossref "$@")
+ fi
+ echo "$doi"
+ [ "$clip" = 1 ] && echo "https://doi.org/${doi}" | \
+ xclip -selection clipboard
+ [ "$notify" = 1 ] && notify-send "$doi"
+ [ "$open" = 1 ] && browser_open "https://doi.org/${doi}"
+}
+
+verbose=0
+number=1
+clip=0
+open=0
+notify=0
+prefix=""
+while :; do
+ case "$1" in
+ -h|-\?|--help)
+ show_help
+ exit 0
+ ;;
+ -v|--version)
+ show_version
+ exit 0
+ ;;
+ -V|--verbose)
+ verbose=1
+ ;;
+ -t|--tor-socks)
+ prefix="torsocks"
+ ;;
+ -N|--number)
+ number="$2"
+ shift
+ ;;
+ -n|--notify)
+ notify=1
+ ;;
+ -c|--clip)
+ clip=1
+ ;;
+ -o|--open)
+ open=1
+ ;;
+ --) # end all options
+ shift
+ break
+ ;;
+ -?*)
+ die 'Error: Unknown option specified'
+ ;;
+ *) # No more options
+ break
+ esac
+ shift
+done
+
+if [ $# -lt 1 ]; then
+ query="$(cat)"
+ get_doi "$query"
+else
+ get_doi "$@"
+fi
diff --git a/getref b/getref
t@@ -0,0 +1,170 @@
+#!/bin/sh
+set -e
+
+version=1.0
+host="https://doi.org"
+
+show_help() {
+ echo "usage: ${0##*/} [OPTIONS] DOI1 [DOI2 ...]"
+ echo "will attempt to get a BibTeX citation from $host"
+ echo "If no DOIs are specified, this program will expect DOIs as stdin…
+ echo
+ echo "OPTIONS are one or more of the following:"
+ echo " -h, --help show this message"
+ echo " -v, --version show version and license information"
+ echo " -V, --verbose show verbose information"
+ echo " -t, --tor-socks use torsocks for HTTP requests"
+ echo " -j, --full-journal return full journal name in citation"
+ echo " -a, --full-author do not shorten author names"
+ echo " -n, --no-newline suppress trailing newline but prepend wit…
+ echo " -N, --notify send desktop notification when complete"
+ echo " -- do not consider any following args as opt…
+}
+
+show_version() {
+ echo "${0##*/} version $version"
+ echo "Licensed under the GNU Public License, v3+"
+ echo "written by Anders Damsgaard, [email protected]"
+ echo "https://gitlab.com/admesg/dotfiles"
+}
+
+die() {
+ printf '%s\n' "$1" >&2
+ exit 1
+}
+
+format_bibtex_key() {
+ sed '/@/ s/_\([0-9]\)/\1/'
+}
+
+abbreviate_journal_name() {
+ sed '/journal = / {
+ s/Journal/J./
+ s/Geophysical/Geophys./
+ s/Research/Res./
+ s/Geophysical/Geophys./
+ s/Geophysics/Geophys./
+ s/Research/Res./
+ s/Letters/Lett./
+ s/Mechanics/Mech./
+ s/Glaciology/Glaciol./
+ s/Proceedings/Proc./
+ s/Royal/R./
+ s/Society/Soc./
+ s/Annals/Ann./
+ s/Resources/Resour./
+ s/Surface/Surf./
+ s/Processes/Proc./
+ s/National/Nat./
+ s/Computers/Comput./
+ s/Geotechnics/Geotech./
+ s/Academy/Acad./
+ s/Sciences/Sci./
+ s/Review/Rev./
+ s/Quaternary/Quat./
+ s/Physical/Phys./
+ s/Planetary/Planet./
+ s/Quarterly/Q./
+ s/Geological/Geol./
+ s/Statistical/Stat./
+ s/Applied/Appl./
+ s/Physics/Phys./
+ s/Communications/Commun./
+ s/Geoscience/Geosci./
+ s/Landforms/Land./
+ s/Science/Sci./
+ s/Annual/Ann./
+ s/International/Int./
+ s/Numerical/Numer./
+ s/Methods/Meth./
+ s/Geomechanics/Geomech./
+ s/Analytical/Anal./
+ s/ for / /
+ s/ of / /
+ s/ and / /
+ s/ in / /
+ }'
+}
+
+abbreviate_author_name() {
+ sed '/author = / { s/\([A-Z]\)[A-Za-z]* \([A-Z]\)/\1. \2/g }'
+}
+
+strip_doi() {
+ sed 's/^(http:\/\/|https:\/\/)?(dx\.)?(doi\.org\/)//'
+}
+
+get_citation() {
+ doi=$(echo "$1" | strip_doi)
+ url="$host/$1"
+ [ "$verbose" = 1 ] && echo "connecting to $url"
+ result=$($prefix curl --location \
+ --header "Accept: application/x-bibtex" \
+ --silent --show-error "$url")
+ echo "$result" | grep -q '<html>' && die 'no result found'
+ result="$(echo "$result" | format_bibtex_key)"
+ [ "$fulljournal" = 0 ] && result="$(echo "$result" | abbreviate_journa…
+ [ "$fullauthor" = 0 ] && result="$(echo "$result" | abbreviate_author_…
+ result="$(echo "$result" | sed 's/\t/ /g' | grep -v '^ url' )"
+ if [ "$nonewline" = 1 ]; then
+ printf "\n%s" "$result"
+ else
+ echo "$result"
+ fi
+ [ "$notify" = 1 ] && notify-send "${0##*/}" "added: $(echo "$result" |…
+ printf ''
+}
+
+verbose=0
+fulljournal=0
+fullauthor=0
+nonewline=0
+notify=0
+prefix=""
+while :; do
+ case "$1" in
+ -h|-\?|--help)
+ show_help
+ exit 0
+ ;;
+ -v|--version)
+ show_version
+ exit 0
+ ;;
+ -j|--full-journal)
+ fulljournal=1
+ ;;
+ -a|--full-author)
+ fullauthor=1
+ ;;
+ -n|--no-newline)
+ nonewline=1
+ ;;
+ -N|--notify)
+ notify=1
+ ;;
+ -V|--verbose)
+ verbose=1
+ ;;
+ -t|--tor-socks)
+ prefix="torsocks"
+ ;;
+ --) # end all options
+ shift
+ break
+ ;;
+ -?*)
+ die 'Error: Unknown option specified'
+ ;;
+ *) # No more options
+ break
+ esac
+ shift
+done
+
+if [ $# -lt 1 ]; then
+ doi="$(cat)"
+ get_citation "$doi"
+else
+ get_citation "$@"
+fi
diff --git a/scholarref b/scholarref
t@@ -0,0 +1,30 @@
+#!/bin/sh
+
+addref=0
+while :; do
+ case "$1" in
+ -a|--add)
+ addref=1
+ ;;
+ --) # end all options
+ shift
+ break
+ ;;
+ -?*)
+ die 'Error: Unknown option specified'
+ ;;
+ *) # No more options
+ break
+ esac
+ shift
+done
+
+if [ "$addref" = 1 ]; then
+ getdoi "$@" | getref -n >> "$BIB"
+ key="$(grep '@.*{' "$BIB" | tail -n 1 | sed 's/.*{//;s/,$//')"
+ echo "Citation $key added to $BIB"
+ notify-send "${0##/*} Citation $key added"
+else
+ getdoi "$@" | getref -n
+fi
+exit 0
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