\documentclass[letterpaper,11pt]{article}
\input{preamble}
\title{\mcf Documentation}
\author{Version 1.5}
\begin{document}
\maketitle
\input{chapters/abstract}
\tableofcontents
%\clearpage
\input{chapters/introduction}
\input{chapters/installation}
\input{chapters/context}
\input{chapters/compatibility}
\input{chapters/help}
\input{chapters/tutorial}
\input{chapters/input-modes}
\input{chapters/output}
\input{chapters/hydrogens}
\input{chapters/bond-lengths}
\input{chapters/polishing}
\input{chapters/recalculating}
\input{chapters/submolecules}
\input{chapters/composite}
\input{chapters/conclusion}
\end{document}