BioX::Seq
=========
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BioX::Seq is a simple sequence class that can be used to represent
biological sequences. It was designed as a compromise between using simple
strings and hashes to hold sequences and using the rather bloated objects of
Bioperl. Features (or, depending on your viewpoint, bugs) include
auto-stringification and context-dependent transformations. It is meant
be used primarily as the return object of the BioX::Seq::Stream and
BioX::Seq::Fetch parsers, but
there may be occasions where it is useful in its own right.
BioX::Seq::Stream and BioX::Seq::Fetch can be used to read in sequence objects
in a streaming or random-access fashion from FASTA and FASTQ files.
INSTALLATION
------------
To install this module, run the following commands:
perl Build.PL
./Build
./Build test
./Build install
SUPPORT AND DOCUMENTATION
-------------------------
After installing, you can find documentation for this module with the
perldoc command.
perldoc BioX::Seq
LICENSE AND COPYRIGHT
---------------------
Copyright (C) 2014-2017 Jeremy Volkening <
[email protected]>
This library is free software; you can redistribute it and/or modify it under
the terms of the GNU Library General Public License as published by the Free
Software Foundation; either version 3 of the License, or (at your option) any
later version.
This library is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
See the LICENSE file in the top-level directory of this distribution for the
full license terms.
