NAME
   App::RecordStream::Bio - A collection of record-handling tools related
   to biology

SYNOPSIS
       # Turn a FASTA into a CSV after filtering for sequence names containing the
       # words POL or GAG.
       recs-fromfasta --oneline < seqs.fasta           \
           | recs-grep '{{id}} =~ /\b(POL|GAG)\b/i'    \
           | recs-tocsv -k id,sequence

       # Filter gaps from sequences
       recs-fromfasta seqs.fasta \
           | recs-xform '{{seq}} =~ s/-//g' \
           | recs-tofasta > seqs-nogaps.fasta

DESCRIPTION
   App::RecordStream::Bio is a collection of record-handling tools related
   to biology built upon the excellent App::RecordStream.

   The operations themselves are written as classes, but you'll almost
   always use them via their command line wrappers within a larger record
   stream pipeline.

TOOLS
   recs-fromfasta

   recs-tofasta

AUTHOR
   Thomas Sibley <[email protected]>

COPYRIGHT
   Copyright 2014- Mullins Lab, Department of Microbiology, University of
   Washington

LICENSE
   This library is free software; you can redistribute it and/or modify it
   under the same terms as Perl itself.

SEE ALSO
   App::RecordStream

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