This is Bio::Das, a set of Perl modules for accessing genomic
annotations distributed using the Distributed Annotation System
(
http://biodas.org). To build, you need XML::Parser and LWP version 5
or higher. Then it's just a matter of:
perl Makefile.PL
make
make test
make install
The tests attempt to contact the WormBase DAS server at
http://www.wormbase.org/db/das. If this data source is down for some
reason, the tests may hang. Don't give up; just try again later.
Full information on using this module is available in the POD
documentation. Start with perldoc Bio::Das. Then read
Bio::Das::Segment, Bio::Das::Segment::Feature, and Bio::Das::Type.
Graphics support for Bio::Das is available in the Bio::Graphics
package, which you can download from CPAN. To use graphics you also
must install the GD module. The file "testgraphics.pl" in the
Bio::Das distribution directory can be used to draw pictures from the
WormBase DAS server.
Address questions to the DAS mailing list. To subscribe, send the
message "subscribe das" to
[email protected].
Lincoln Stein
[email protected]