Bio-Glite version 0.01
======================
Bio::Glite is an interface to G-language Genome Analysis Environment
through its REST web service (
http://www.g-language.org). This module
allows almost everything G-language GAE can do, without installing
all necessary tookits and modules.
Advantage of this module over the standard installation of G-language
GAE package is:
1. Easy installation from CPAN
2. Extremely light-weight (less than 1000 lines of code)
3. Does not require much CPU/RAM (all calculation is done on the cloud)
Disadvantages includes:
1. Slower analysis speed
2. Internet connection is required
3. No other software interfaces such as the G-language Shell
Quick Example:
use Bio::Glite;
my $gb = load('mgen'); # could also be a local GenBank/EMBL/FASTA file, or an accession number
foreach my $cds ($gb->cds()){
say ">" . $gb->{$cds}->{gene};
say $gb->{$cds}->{translation};
}
gcskew($gb, -cumulative=>1, -at=>1);
say $gb->{filename};
say gcsi($gb);
For details about the >100 features of G-language GAE, please consult
the documentations provided at our website (
http://www.g-language.org).
INSTALLATION
To install this module type the following:
perl Makefile.PL
make
make test
make install
DEPENDENCIES
This module requires these other modules and libraries:
Data::Dumper
LWP::UserAgent
COPYRIGHT AND LICENCE
Copyright (C) 2009 by Kazuharu Arakawa (
[email protected])
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself, either Perl version 5.8.8 or,
at your option, any later version of Perl 5 you may have available.
