---
abstract: 'BioPerl-Run - wrapper toolkit'
author:
 - 'BioPerl Team <[email protected]>'
build_requires: {}
configure_requires:
 Module::Build: 0.38
dynamic_config: 1
generated_by: 'Module::Build version 0.38, CPAN::Meta::Converter version 2.110580'
license: perl
meta-spec:
 url: http://module-build.sourceforge.net/META-spec-v1.4.html
 version: 1.4
name: BioPerl-Run
provides:
 Bio::DB::ESoap:
   file: lib/Bio/DB/ESoap.pm
   version: 0
 Bio::DB::ESoap::WSDL:
   file: lib/Bio/DB/ESoap/WSDL.pm
   version: 0
 Bio::DB::SoapEUtilities:
   file: lib/Bio/DB/SoapEUtilities.pm
   version: 0
 Bio::DB::SoapEUtilities::DocSumAdaptor:
   file: lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::DocSumAdaptor::docsum:
   file: lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::FetchAdaptor:
   file: lib/Bio/DB/SoapEUtilities/FetchAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::FetchAdaptor::seq:
   file: lib/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
   version: 0
 Bio::DB::SoapEUtilities::FetchAdaptor::species:
   file: lib/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
   version: 0
 Bio::DB::SoapEUtilities::GQueryAdaptor:
   file: lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::GQueryAdaptor::gquery:
   file: lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::LinkAdaptor:
   file: lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::LinkAdaptor::linkset:
   file: lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm
   version: 0
 Bio::DB::SoapEUtilities::Result:
   file: lib/Bio/DB/SoapEUtilities/Result.pm
   version: 0
 Bio::Factory::EMBOSS:
   file: lib/Bio/Factory/EMBOSS.pm
   version: 0
 Bio::Installer::Clustalw:
   file: lib/Bio/Installer/Clustalw.pm
   version: 0
 Bio::Installer::EMBOSS:
   file: lib/Bio/Installer/EMBOSS.pm
   version: 0
 Bio::Installer::Generic:
   file: lib/Bio/Installer/Generic.pm
   version: 0
 Bio::Installer::Hyphy:
   file: lib/Bio/Installer/Hyphy.pm
   version: 0
 Bio::Installer::Muscle:
   file: lib/Bio/Installer/Muscle.pm
   version: 0
 Bio::Installer::PAML:
   file: lib/Bio/Installer/PAML.pm
   version: 0
 Bio::Installer::Probcons:
   file: lib/Bio/Installer/Probcons.pm
   version: 0
 Bio::Installer::SLR:
   file: lib/Bio/Installer/SLR.pm
   version: 0
 Bio::Installer::TCoffee:
   file: lib/Bio/Installer/TCoffee.pm
   version: 0
 Bio::Tools::Run::Alignment::Amap:
   file: lib/Bio/Tools/Run/Alignment/Amap.pm
   version: 0
 Bio::Tools::Run::Alignment::Blat:
   file: lib/Bio/Tools/Run/Alignment/Blat.pm
   version: 0
 Bio::Tools::Run::Alignment::Clustalw:
   file: lib/Bio/Tools/Run/Alignment/Clustalw.pm
   version: 0
 Bio::Tools::Run::Alignment::DBA:
   file: lib/Bio/Tools/Run/Alignment/DBA.pm
   version: 0
 Bio::Tools::Run::Alignment::Exonerate:
   file: lib/Bio/Tools/Run/Alignment/Exonerate.pm
   version: 0
 Bio::Tools::Run::Alignment::Gmap:
   file: lib/Bio/Tools/Run/Alignment/Gmap.pm
   version: 0
 Bio::Tools::Run::Alignment::Kalign:
   file: lib/Bio/Tools/Run/Alignment/Kalign.pm
   version: 0
 Bio::Tools::Run::Alignment::Lagan:
   file: lib/Bio/Tools/Run/Alignment/Lagan.pm
   version: 0
 Bio::Tools::Run::Alignment::MAFFT:
   file: lib/Bio/Tools/Run/Alignment/MAFFT.pm
   version: 0
 Bio::Tools::Run::Alignment::Muscle:
   file: lib/Bio/Tools/Run/Alignment/Muscle.pm
   version: 0
 Bio::Tools::Run::Alignment::Pal2Nal:
   file: lib/Bio/Tools/Run/Alignment/Pal2Nal.pm
   version: 0
 Bio::Tools::Run::Alignment::Probalign:
   file: lib/Bio/Tools/Run/Alignment/Probalign.pm
   version: 0
 Bio::Tools::Run::Alignment::Probcons:
   file: lib/Bio/Tools/Run/Alignment/Probcons.pm
   version: 0
 Bio::Tools::Run::Alignment::Proda:
   file: lib/Bio/Tools/Run/Alignment/Proda.pm
   version: 0
 Bio::Tools::Run::Alignment::Sim4:
   file: lib/Bio/Tools/Run/Alignment/Sim4.pm
   version: 0
 Bio::Tools::Run::Alignment::StandAloneFasta:
   file: lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm
   version: 0
 Bio::Tools::Run::Alignment::TCoffee:
   file: lib/Bio/Tools/Run/Alignment/TCoffee.pm
   version: 0
 Bio::Tools::Run::Analysis:
   file: lib/Bio/Tools/Run/Analysis.pm
   version: 0
 Bio::Tools::Run::Analysis::Job:
   file: lib/Bio/Tools/Run/Analysis.pm
   version: 0
 Bio::Tools::Run::Analysis::Job::soap:
   file: lib/Bio/Tools/Run/Analysis/soap.pm
   version: 0
 Bio::Tools::Run::Analysis::Utils:
   file: lib/Bio/Tools/Run/Analysis.pm
   version: 0
 Bio::Tools::Run::Analysis::soap:
   file: lib/Bio/Tools/Run/Analysis/soap.pm
   version: 0
 Bio::Tools::Run::AnalysisFactory:
   file: lib/Bio/Tools/Run/AnalysisFactory.pm
   version: 0
 Bio::Tools::Run::AnalysisFactory::soap:
   file: lib/Bio/Tools/Run/AnalysisFactory/soap.pm
   version: 0
 Bio::Tools::Run::AssemblerBase:
   file: lib/Bio/Tools/Run/AssemblerBase.pm
   version: 0
 Bio::Tools::Run::BEDTools:
   file: lib/Bio/Tools/Run/BEDTools.pm
   version: 0
 Bio::Tools::Run::BEDTools::Config:
   file: lib/Bio/Tools/Run/BEDTools/Config.pm
   version: 0
 Bio::Tools::Run::BWA:
   file: lib/Bio/Tools/Run/BWA.pm
   version: 0
 Bio::Tools::Run::BWA::Config:
   file: lib/Bio/Tools/Run/BWA/Config.pm
   version: 0
 Bio::Tools::Run::BlastPlus:
   file: lib/Bio/Tools/Run/BlastPlus.pm
   version: 0
 Bio::Tools::Run::BlastPlus::Config:
   file: lib/Bio/Tools/Run/BlastPlus/Config.pm
   version: 0
 Bio::Tools::Run::Bowtie:
   file: lib/Bio/Tools/Run/Bowtie.pm
   version: 0
 Bio::Tools::Run::Bowtie::Config:
   file: lib/Bio/Tools/Run/Bowtie/Config.pm
   version: 0
 Bio::Tools::Run::Cap3:
   file: lib/Bio/Tools/Run/Cap3.pm
   version: 0
 Bio::Tools::Run::Coil:
   file: lib/Bio/Tools/Run/Coil.pm
   version: 0
 Bio::Tools::Run::EMBOSSApplication:
   file: lib/Bio/Tools/Run/EMBOSSApplication.pm
   version: 0
 Bio::Tools::Run::EMBOSSacd:
   file: lib/Bio/Tools/Run/EMBOSSacd.pm
   version: 0
 Bio::Tools::Run::ERPIN:
   file: lib/Bio/Tools/Run/ERPIN.pm
   version: 0
 Bio::Tools::Run::Ensembl:
   file: lib/Bio/Tools/Run/Ensembl.pm
   version: 0
 Bio::Tools::Run::Eponine:
   file: lib/Bio/Tools/Run/Eponine.pm
   version: 0
 Bio::Tools::Run::FootPrinter:
   file: lib/Bio/Tools/Run/FootPrinter.pm
   version: 0
 Bio::Tools::Run::Genemark:
   file: lib/Bio/Tools/Run/Genemark.pm
   version: 0
 Bio::Tools::Run::Genewise:
   file: lib/Bio/Tools/Run/Genewise.pm
   version: 0
 Bio::Tools::Run::Genscan:
   file: lib/Bio/Tools/Run/Genscan.pm
   version: 0
 Bio::Tools::Run::Glimmer:
   file: lib/Bio/Tools/Run/Glimmer.pm
   version: 0
 Bio::Tools::Run::Hmmer:
   file: lib/Bio/Tools/Run/Hmmer.pm
   version: 0
 Bio::Tools::Run::Infernal:
   file: lib/Bio/Tools/Run/Infernal.pm
   version: 0
 Bio::Tools::Run::MCS:
   file: lib/Bio/Tools/Run/MCS.pm
   version: 0
 Bio::Tools::Run::Maq:
   file: lib/Bio/Tools/Run/Maq.pm
   version: 0
 Bio::Tools::Run::Maq::Config:
   file: lib/Bio/Tools/Run/Maq/Config.pm
   version: 0
 Bio::Tools::Run::Match:
   file: lib/Bio/Tools/Run/Match.pm
   version: 0
 Bio::Tools::Run::Mdust:
   file: lib/Bio/Tools/Run/Mdust.pm
   version: 0
 Bio::Tools::Run::Meme:
   file: lib/Bio/Tools/Run/Meme.pm
   version: 0
 Bio::Tools::Run::Minimo:
   file: lib/Bio/Tools/Run/Minimo.pm
   version: 0
 Bio::Tools::Run::Newbler:
   file: lib/Bio/Tools/Run/Newbler.pm
   version: 0
 Bio::Tools::Run::Phrap:
   file: lib/Bio/Tools/Run/Phrap.pm
   version: 0
 Bio::Tools::Run::Phylo::Gerp:
   file: lib/Bio/Tools/Run/Phylo/Gerp.pm
   version: 0
 Bio::Tools::Run::Phylo::Gumby:
   file: lib/Bio/Tools/Run/Phylo/Gumby.pm
   version: 0
 Bio::Tools::Run::Phylo::Hyphy::Base:
   file: lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm
   version: 0
 Bio::Tools::Run::Phylo::Hyphy::FEL:
   file: lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
   version: 0
 Bio::Tools::Run::Phylo::Hyphy::Modeltest:
   file: lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
   version: 0
 Bio::Tools::Run::Phylo::Hyphy::REL:
   file: lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm
   version: 0
 Bio::Tools::Run::Phylo::Hyphy::SLAC:
   file: lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
   version: 0
 Bio::Tools::Run::Phylo::LVB:
   file: lib/Bio/Tools/Run/Phylo/LVB.pm
   version: 0
 Bio::Tools::Run::Phylo::Molphy::ProtML:
   file: lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
   version: 0
 Bio::Tools::Run::Phylo::Njtree::Best:
   file: lib/Bio/Tools/Run/Phylo/Njtree/Best.pm
   version: 0
 Bio::Tools::Run::Phylo::PAML::Baseml:
   file: lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
   version: 0
 Bio::Tools::Run::Phylo::PAML::Codeml:
   file: lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
   version: 0
 Bio::Tools::Run::Phylo::PAML::Evolver:
   file: lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
   version: 0
 Bio::Tools::Run::Phylo::PAML::Yn00:
   file: lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
   version: 0
 Bio::Tools::Run::Phylo::Phast::PhastCons:
   file: lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
   version: 0
 Bio::Tools::Run::Phylo::Phast::PhyloFit:
   file: lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::Base:
   file: lib/Bio/Tools/Run/Phylo/Phylip/Base.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::Consense:
   file: lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::DrawGram:
   file: lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::DrawTree:
   file: lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::Neighbor:
   file: lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::PhylipConf:
   file: lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::ProtDist:
   file: lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::ProtPars:
   file: lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
   version: 0
 Bio::Tools::Run::Phylo::Phylip::SeqBoot:
   file: lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
   version: 0
 Bio::Tools::Run::Phylo::PhyloBase:
   file: lib/Bio/Tools/Run/Phylo/PhyloBase.pm
   version: 0
 Bio::Tools::Run::Phylo::Phyml:
   file: lib/Bio/Tools/Run/Phylo/Phyml.pm
   version: 0
 Bio::Tools::Run::Phylo::QuickTree:
   file: lib/Bio/Tools/Run/Phylo/QuickTree.pm
   version: 0
 Bio::Tools::Run::Phylo::SLR:
   file: lib/Bio/Tools/Run/Phylo/SLR.pm
   version: 0
 Bio::Tools::Run::Phylo::Semphy:
   file: lib/Bio/Tools/Run/Phylo/Semphy.pm
   version: 0
 Bio::Tools::Run::Primate:
   file: lib/Bio/Tools/Run/Primate.pm
   version: 0
 Bio::Tools::Run::Primer3:
   file: lib/Bio/Tools/Run/Primer3.pm
   version: 0
 Bio::Tools::Run::Prints:
   file: lib/Bio/Tools/Run/Prints.pm
   version: 0
 Bio::Tools::Run::Profile:
   file: lib/Bio/Tools/Run/Profile.pm
   version: 0
 Bio::Tools::Run::Promoterwise:
   file: lib/Bio/Tools/Run/Promoterwise.pm
   version: 0
 Bio::Tools::Run::Pseudowise:
   file: lib/Bio/Tools/Run/Pseudowise.pm
   version: 0
 Bio::Tools::Run::RNAMotif:
   file: lib/Bio/Tools/Run/RNAMotif.pm
   version: 0
 Bio::Tools::Run::RepeatMasker:
   file: lib/Bio/Tools/Run/RepeatMasker.pm
   version: 0
 Bio::Tools::Run::Samtools:
   file: lib/Bio/Tools/Run/Samtools.pm
   version: 0
 Bio::Tools::Run::Samtools::Config:
   file: lib/Bio/Tools/Run/Samtools/Config.pm
   version: 0
 Bio::Tools::Run::Seg:
   file: lib/Bio/Tools/Run/Seg.pm
   version: 0
 Bio::Tools::Run::Signalp:
   file: lib/Bio/Tools/Run/Signalp.pm
   version: 0
 Bio::Tools::Run::Simprot:
   file: lib/Bio/Tools/Run/Simprot.pm
   version: 0
 Bio::Tools::Run::StandAloneBlastPlus:
   file: lib/Bio/Tools/Run/StandAloneBlastPlus.pm
   version: 0
 Bio::Tools::Run::TigrAssembler:
   file: lib/Bio/Tools/Run/TigrAssembler.pm
   version: 0
 Bio::Tools::Run::Tmhmm:
   file: lib/Bio/Tools/Run/Tmhmm.pm
   version: 0
 Bio::Tools::Run::TribeMCL:
   file: lib/Bio/Tools/Run/TribeMCL.pm
   version: 0
 Bio::Tools::Run::Vista:
   file: lib/Bio/Tools/Run/Vista.pm
   version: 0
 Bio::Tools::Run::tRNAscanSE:
   file: lib/Bio/Tools/Run/tRNAscanSE.pm
   version: 0
recommends:
 Algorithm::Diff: 0
 File::Sort: 0
 IO::String: 0
 IPC::Run: 0
 XML::Twig: 0
requires:
 Bio::Root::Version: 1.006900
 perl: v5.6.1
resources:
 license: http://dev.perl.org/licenses/
version: 1.006900

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