tadded scripts to resume simulations - sphere - GPU-based 3D discrete element m… | |
git clone git://src.adamsgaard.dk/sphere | |
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LICENSE | |
--- | |
commit 1d927157ef3be46380021661146ac87bc424af79 | |
parent 591daf5e211d81a2c123ebda6c66e4ab90b6a776 | |
Author: Anders Damsgaard <[email protected]> | |
Date: Mon, 17 Nov 2014 11:26:52 +0100 | |
added scripts to resume simulations | |
Diffstat: | |
A python/halfshear-darcy-velfac0.5-c… | 49 +++++++++++++++++++++++++++… | |
A python/halfshear-darcy-velfac1-con… | 49 +++++++++++++++++++++++++++… | |
A python/halfshear-darcy-velfac2-con… | 49 +++++++++++++++++++++++++++… | |
3 files changed, 147 insertions(+), 0 deletions(-) | |
--- | |
diff --git a/python/halfshear-darcy-velfac0.5-cont.sh b/python/halfshear-darcy-… | |
t@@ -0,0 +1,49 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-v0.5 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-14-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-15-mu=1.797e-06… | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" | |
diff --git a/python/halfshear-darcy-velfac1-cont.sh b/python/halfshear-darcy-ve… | |
t@@ -0,0 +1,49 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-v1 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-14-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-15-mu=1.797e-06… | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" | |
diff --git a/python/halfshear-darcy-velfac2-cont.sh b/python/halfshear-darcy-ve… | |
t@@ -0,0 +1,49 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-v2 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-14-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-15-mu=1.797e-06… | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" |