tadded simulations for N=80kPa, decrease p_f axis lims - sphere - GPU-based 3D … | |
git clone git://src.adamsgaard.dk/sphere | |
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--- | |
commit 01f8d706e9c77ddcd64baa72996b7758bf4180e5 | |
parent 3988d78163cbc3cafac1da217644cd7145716b86 | |
Author: Anders Damsgaard <[email protected]> | |
Date: Wed, 15 Apr 2015 10:32:40 +0200 | |
added simulations for N=80kPa, decrease p_f axis lims | |
Diffstat: | |
A python/halfshear-darcy-strength-di… | 49 +++++++++++++++++++++++++++… | |
A python/halfshear-darcy-strength-di… | 51 +++++++++++++++++++++++++++… | |
M python/halfshear-darcy-strength-di… | 2 +- | |
M python/halfshear-darcy-strength-di… | 4 ++-- | |
A python/halfshear-darcy-velfac1-N80… | 49 +++++++++++++++++++++++++++… | |
A python/halfshear-darcy-velfac1-N80… | 50 +++++++++++++++++++++++++++… | |
6 files changed, 202 insertions(+), 3 deletions(-) | |
--- | |
diff --git a/python/halfshear-darcy-strength-dilation-rate-N80-cont.sh b/python… | |
t@@ -0,0 +1,49 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-r-N80 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+python continue_sim.py halfshear-darcy-sigma0=80000.0-k_c=3.5e-13-mu=6.11e-07-… | |
+python continue_sim.py halfshear-darcy-sigma0=80000.0-k_c=3.5e-14-mu=1.797e-07… | |
+python continue_sim.py halfshear-darcy-sigma0=80000.0-k_c=3.5e-15-mu=1.797e-08… | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" | |
diff --git a/python/halfshear-darcy-strength-dilation-rate-N80.sh b/python/half… | |
t@@ -0,0 +1,51 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-r-N80 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+# $ python shear-starter.py <DEVICE> <FLUID> <C_PHI> <C_GRAD_P> <SIGMA_0> | |
+#python halfshear-darcy-starter.py 0 1 1.0 3.5e-15 80000.0 1.797e-6 1.0 & from… | |
+python halfshear-darcy-starter.py 0 1 1.0 3.5e-15 80000.0 6.110e-7 1.0 & | |
+python halfshear-darcy-starter.py 1 1 1.0 3.5e-15 80000.0 1.797e-7 1.0 & | |
+python halfshear-darcy-starter.py 2 1 1.0 3.5e-15 80000.0 1.797e-8 1.0 & | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" | |
diff --git a/python/halfshear-darcy-strength-dilation-rate.py b/python/halfshea… | |
t@@ -429,7 +429,7 @@ for c in numpy.arange(0,len(mu_f_vals)): | |
ax1.set_xlim([0.0, 1.0]) | |
ax1.set_ylim([0.0, 1.0]) | |
ax2.set_ylim([0.0, 1.0]) | |
- ax3.set_ylim([-200., 200.]) | |
+ ax3.set_ylim([-150., 150.]) | |
#ax1.set_ylim([0.0, 1.0]) | |
#if pressures: | |
diff --git a/python/halfshear-darcy-strength-dilation.py b/python/halfshear-dar… | |
t@@ -233,7 +233,7 @@ for c in numpy.arange(0,len(k_c_vals)): | |
#alpha=alpha, color=color[c]) | |
# smoothed | |
- ax1.plot(shear_strain[c][1:], smooth(friction[c], smooth_window)[1:], \ | |
+ ax1.plot(shear_strain[c][1:-10], smooth(friction[c], smooth_window)[1:-10]… | |
label=label, linewidth=1, | |
alpha=alpha, color=color[c]) | |
t@@ -440,7 +440,7 @@ for c in numpy.arange(0,len(k_c_vals)): | |
ax1.set_ylim([0.0, 1.0]) | |
ax2.set_ylim([0.0, 1.0]) | |
if fluid: | |
- ax3.set_ylim([-200., 200.]) | |
+ ax3.set_ylim([-150., 150.]) | |
#ax1.set_ylim([0.0, 1.0]) | |
#if pressures: | |
diff --git a/python/halfshear-darcy-velfac1-N80-cont.sh b/python/halfshear-darc… | |
t@@ -0,0 +1,49 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-N80 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+python continue_sim.py halfshear-darcy-sigma0=80000.0-k_c=3.5e-13-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=80000.0-k_c=3.5e-14-mu=1.797e-06… | |
+python continue_sim.py halfshear-darcy-sigma0=80000.0-k_c=3.5e-15-mu=1.797e-06… | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" | |
diff --git a/python/halfshear-darcy-velfac1-N80.sh b/python/halfshear-darcy-vel… | |
t@@ -0,0 +1,50 @@ | |
+#!/bin/sh | |
+#PBS -N hs-d-N80 | |
+#PBS -l nodes=1:ppn=3 | |
+#PBS -l walltime=48:00:00 | |
+#PBS -q qfermi | |
+#PBS -M [email protected] | |
+#PBS -m abe | |
+ | |
+# Grendel CUDA | |
+source /com/gcc/4.6.4/load.sh | |
+CUDAPATH=/com/cuda/5.5.22 | |
+export PATH=$HOME/bin:$PATH | |
+export PATH=$CUDAPATH/bin:$PATH | |
+export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH | |
+ | |
+# Manually installed Python modules | |
+export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH | |
+export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH | |
+ | |
+# Manually installed Python | |
+#export PATH=/home/adc/.local/bin:$PATH | |
+ | |
+# Shared Python2.7 | |
+PYTHON=/com/python/2.7.6 | |
+export PYTHONPATH=$PYTHON/lib:$PYTHONPATH | |
+export PATH=$PYTHON/bin:$PATH | |
+ | |
+echo "`whoami`@`hostname`" | |
+echo "Start at `date`" | |
+ | |
+ORIGDIR=/home/adc/code/sphere | |
+#WORKDIR=/scratch/$PBS_JOBID | |
+WORKDIR=$ORIGDIR | |
+ | |
+#cp -r $ORIGDIR/* $WORKDIR | |
+ | |
+cd $WORKDIR | |
+nvidia-smi | |
+rm CMakeCache.txt | |
+cmake . && make | |
+cd python | |
+# $ python shear-starter.py <DEVICE> <FLUID> <C_PHI> <C_GRAD_P> <SIGMA_0> | |
+python halfshear-darcy-starter.py 0 1 1.0 3.5e-13 80000.0 1.797e-6 1.0 & | |
+python halfshear-darcy-starter.py 1 1 1.0 3.5e-14 80000.0 1.797e-6 1.0 & | |
+python halfshear-darcy-starter.py 2 1 1.0 3.5e-15 80000.0 1.797e-6 1.0 & | |
+wait | |
+ | |
+#cp $WORKDIR/output/* $ORIGDIR/output/ | |
+ | |
+echo "End at `date`" |