<?xml version="1.0" encoding="UTF-8"?>
<feed xmlns="http://www.w3.org/2005/Atom">
<title>slidergrid, branch HEAD</title>
<subtitle>grid of elastic sliders on a frictional surface
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<entry>
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<published>2020-01-02T09:40:42Z</published>
<updated>2020-01-02T09:40:42Z</updated>
<title type="text">Change to ISC license</title>
<link rel="alternate" href="commit/e86bb061fd2bdf9241de4ea11d28f72dd7f9debd.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
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<content type="text">commit e86bb061fd2bdf9241de4ea11d28f72dd7f9debd
parent ce975080d4afb2c66265f61f2cf93ff2937007bf
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu,  2 Jan 2020 10:40:42 +0100

Change to ISC license

</content>
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<entry>
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<published>2019-09-07T06:25:37Z</published>
<updated>2019-09-07T06:25:37Z</updated>
<title type="text">Update README</title>
<link rel="alternate" href="commit/ce975080d4afb2c66265f61f2cf93ff2937007bf.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit ce975080d4afb2c66265f61f2cf93ff2937007bf
parent 01f9042427f6b9e5933c803f55b9fdafe5b4a33c
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Sat,  7 Sep 2019 08:25:37 +0200

Update README

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<entry>
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<published>2016-05-04T20:10:02Z</published>
<updated>2016-05-04T20:10:02Z</updated>
<title type="text">improve documentation</title>
<link rel="alternate" href="commit/01f9042427f6b9e5933c803f55b9fdafe5b4a33c.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 01f9042427f6b9e5933c803f55b9fdafe5b4a33c
parent 897289bb9cc3233e556ccd4b863cdfaf4dea29b0
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Wed,  4 May 2016 13:10:02 -0700

improve documentation

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<published>2016-05-02T16:58:42Z</published>
<updated>2016-05-02T16:58:42Z</updated>
<title type="text">add system of equations for 3d beam</title>
<link rel="alternate" href="commit/897289bb9cc3233e556ccd4b863cdfaf4dea29b0.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 897289bb9cc3233e556ccd4b863cdfaf4dea29b0
parent 01b81b008518de59f62d4471b397364dd6b78f9a
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Mon,  2 May 2016 09:58:42 -0700

add system of equations for 3d beam

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<published>2016-04-20T18:47:16Z</published>
<updated>2016-04-20T18:47:16Z</updated>
<title type="text">simplify relative velocity calculation</title>
<link rel="alternate" href="commit/01b81b008518de59f62d4471b397364dd6b78f9a.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 01b81b008518de59f62d4471b397364dd6b78f9a
parent 7226d7854eb5fe81d9ea7c55f6bf134a462991c9
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Wed, 20 Apr 2016 11:47:16 -0700

simplify relative velocity calculation

</content>
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<entry>
<id>7226d7854eb5fe81d9ea7c55f6bf134a462991c9</id>
<published>2016-04-20T18:24:44Z</published>
<updated>2016-04-20T18:24:44Z</updated>
<title type="text">the contact velocity should use normal vector instead of distance vector</title>
<link rel="alternate" href="commit/7226d7854eb5fe81d9ea7c55f6bf134a462991c9.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 7226d7854eb5fe81d9ea7c55f6bf134a462991c9
parent 40de282160ee90a414a91f45c48f1a8bfd2bd6bc
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Wed, 20 Apr 2016 11:24:44 -0700

the contact velocity should use normal vector instead of distance vector

</content>
</entry>
<entry>
<id>40de282160ee90a414a91f45c48f1a8bfd2bd6bc</id>
<published>2016-04-19T23:14:52Z</published>
<updated>2016-04-19T23:14:52Z</updated>
<title type="text">insert intro text</title>
<link rel="alternate" href="commit/40de282160ee90a414a91f45c48f1a8bfd2bd6bc.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 40de282160ee90a414a91f45c48f1a8bfd2bd6bc
parent 476c2046fbb6ac2eef3d7a24403db6918e665dde
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 16:14:52 -0700

insert intro text

</content>
</entry>
<entry>
<id>476c2046fbb6ac2eef3d7a24403db6918e665dde</id>
<published>2016-04-19T23:08:17Z</published>
<updated>2016-04-19T23:08:17Z</updated>
<title type="text">add twist test</title>
<link rel="alternate" href="commit/476c2046fbb6ac2eef3d7a24403db6918e665dde.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 476c2046fbb6ac2eef3d7a24403db6918e665dde
parent 399bec23e552877fa5063f68fed06706d4d109eb
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 16:08:17 -0700

add twist test

</content>
</entry>
<entry>
<id>399bec23e552877fa5063f68fed06706d4d109eb</id>
<published>2016-04-19T23:07:50Z</published>
<updated>2016-04-19T23:07:50Z</updated>
<title type="text">ignore test binaries and output folders</title>
<link rel="alternate" href="commit/399bec23e552877fa5063f68fed06706d4d109eb.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 399bec23e552877fa5063f68fed06706d4d109eb
parent f5386a896ba503a6afe938bdb950890b44bb1727
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 16:07:50 -0700

ignore test binaries and output folders

</content>
</entry>
<entry>
<id>f5386a896ba503a6afe938bdb950890b44bb1727</id>
<published>2016-04-19T23:06:20Z</published>
<updated>2016-04-19T23:06:20Z</updated>
<title type="text">add example simulation, remove extra ignores</title>
<link rel="alternate" href="commit/f5386a896ba503a6afe938bdb950890b44bb1727.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit f5386a896ba503a6afe938bdb950890b44bb1727
parent dbdc108fdbb4c7ac7367ca6d93b5987ce0707d44
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 16:06:20 -0700

add example simulation, remove extra ignores

</content>
</entry>
<entry>
<id>dbdc108fdbb4c7ac7367ca6d93b5987ce0707d44</id>
<published>2016-04-19T23:05:48Z</published>
<updated>2016-04-19T23:05:48Z</updated>
<title type="text">ignore latex build files</title>
<link rel="alternate" href="commit/dbdc108fdbb4c7ac7367ca6d93b5987ce0707d44.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit dbdc108fdbb4c7ac7367ca6d93b5987ce0707d44
parent 2e3e599c10ff71550ea323dc5d1a7b9a86fb04bd
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 16:05:48 -0700

ignore latex build files

</content>
</entry>
<entry>
<id>2e3e599c10ff71550ea323dc5d1a7b9a86fb04bd</id>
<published>2016-04-19T23:04:13Z</published>
<updated>2016-04-19T23:04:13Z</updated>
<title type="text">add outline for documentation of methods</title>
<link rel="alternate" href="commit/2e3e599c10ff71550ea323dc5d1a7b9a86fb04bd.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 2e3e599c10ff71550ea323dc5d1a7b9a86fb04bd
parent 7394876c00fe2230bb855621da3aa936ddd35baf
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 16:04:13 -0700

add outline for documentation of methods

</content>
</entry>
<entry>
<id>7394876c00fe2230bb855621da3aa936ddd35baf</id>
<published>2016-04-19T19:09:55Z</published>
<updated>2016-04-19T19:09:55Z</updated>
<title type="text">add Kelvin-Voigt parameters for twist and bending</title>
<link rel="alternate" href="commit/7394876c00fe2230bb855621da3aa936ddd35baf.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit 7394876c00fe2230bb855621da3aa936ddd35baf
parent bbf7010bcf7ceae41f9d8bf35c2f7d1f1e66ae78
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Tue, 19 Apr 2016 12:09:55 -0700

add Kelvin-Voigt parameters for twist and bending

</content>
</entry>
<entry>
<id>bbf7010bcf7ceae41f9d8bf35c2f7d1f1e66ae78</id>
<published>2016-04-18T23:06:46Z</published>
<updated>2016-04-18T23:06:46Z</updated>
<title type="text">resolve twist on bond</title>
<link rel="alternate" href="commit/bbf7010bcf7ceae41f9d8bf35c2f7d1f1e66ae78.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit bbf7010bcf7ceae41f9d8bf35c2f7d1f1e66ae78
parent d852181baa63f618bea35aa6d8d6053763688920
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Mon, 18 Apr 2016 16:06:46 -0700

resolve twist on bond

</content>
</entry>
<entry>
<id>d852181baa63f618bea35aa6d8d6053763688920</id>
<published>2016-04-18T21:55:29Z</published>
<updated>2016-04-18T21:55:29Z</updated>
<title type="text">add arrays for twisting and bending of the bond</title>
<link rel="alternate" href="commit/d852181baa63f618bea35aa6d8d6053763688920.gph" />
<author>
<name>Anders Damsgaard Christensen</name>
<email>[email protected]</email>
</author>
<content type="text">commit d852181baa63f618bea35aa6d8d6053763688920
parent 86fc15639894a4f2ebaaba73678afc6245e2d8e7
Author: Anders Damsgaard Christensen &lt;[email protected]&gt;
Date:   Mon, 18 Apr 2016 14:55:29 -0700

add arrays for twisting and bending of the bond

</content>
</entry>
<entry>
<id>86fc15639894a4f2ebaaba73678afc6245e2d8e7</id>
<published>2016-04-15T21:52:12Z</published>
<updated>2016-04-15T21:52:12Z</updated>
<title type="text">fix normal-impact simulation parameters</title>
<link rel="alternate" href="commit/86fc15639894a4f2ebaaba73678afc6245e2d8e7.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 86fc15639894a4f2ebaaba73678afc6245e2d8e7
parent 8767c0aedd2863ea48fb447851a62fa232a9a8f1
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Fri, 15 Apr 2016 14:52:12 -0700

fix normal-impact simulation parameters

</content>
</entry>
<entry>
<id>8767c0aedd2863ea48fb447851a62fa232a9a8f1</id>
<published>2016-04-14T22:32:00Z</published>
<updated>2016-04-14T22:32:00Z</updated>
<title type="text">fix format of long int</title>
<link rel="alternate" href="commit/8767c0aedd2863ea48fb447851a62fa232a9a8f1.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 8767c0aedd2863ea48fb447851a62fa232a9a8f1
parent 04efc5912ba233ff656bd21008535f71bbaa7404
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 15:32:00 -0700

fix format of long int

</content>
</entry>
<entry>
<id>04efc5912ba233ff656bd21008535f71bbaa7404</id>
<published>2016-04-14T22:29:12Z</published>
<updated>2016-04-14T22:29:12Z</updated>
<title type="text">add debug output for tangential components</title>
<link rel="alternate" href="commit/04efc5912ba233ff656bd21008535f71bbaa7404.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 04efc5912ba233ff656bd21008535f71bbaa7404
parent 1e22f447f8ca996ea6d0fbb9edff3e0af18f7591
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 15:29:12 -0700

add debug output for tangential components

</content>
</entry>
<entry>
<id>1e22f447f8ca996ea6d0fbb9edff3e0af18f7591</id>
<published>2016-04-14T20:09:43Z</published>
<updated>2016-04-14T20:09:43Z</updated>
<title type="text">include missing parameters to printf statement</title>
<link rel="alternate" href="commit/1e22f447f8ca996ea6d0fbb9edff3e0af18f7591.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 1e22f447f8ca996ea6d0fbb9edff3e0af18f7591
parent c0247d0e47f5d802895fb09e6e89e66b1c69d08c
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 13:09:43 -0700

include missing parameters to printf statement

</content>
</entry>
<entry>
<id>c0247d0e47f5d802895fb09e6e89e66b1c69d08c</id>
<published>2016-04-14T20:04:10Z</published>
<updated>2016-04-14T20:04:10Z</updated>
<title type="text">include rotational kinematics in debug output</title>
<link rel="alternate" href="commit/c0247d0e47f5d802895fb09e6e89e66b1c69d08c.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit c0247d0e47f5d802895fb09e6e89e66b1c69d08c
parent 1fd2ff5c433e192a246da1919a7346ec6ec3dafc
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 13:04:10 -0700

include rotational kinematics in debug output

</content>
</entry>
<entry>
<id>1fd2ff5c433e192a246da1919a7346ec6ec3dafc</id>
<published>2016-04-14T19:38:12Z</published>
<updated>2016-04-14T19:38:12Z</updated>
<title type="text">fix makefile targets</title>
<link rel="alternate" href="commit/1fd2ff5c433e192a246da1919a7346ec6ec3dafc.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 1fd2ff5c433e192a246da1919a7346ec6ec3dafc
parent 7db54ba64467af8531138bebce18c069a29222d6
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 12:38:12 -0700

fix makefile targets

</content>
</entry>
<entry>
<id>7db54ba64467af8531138bebce18c069a29222d6</id>
<published>2016-04-14T19:36:49Z</published>
<updated>2016-04-14T19:36:49Z</updated>
<title type="text">increase runtime of shear example</title>
<link rel="alternate" href="commit/7db54ba64467af8531138bebce18c069a29222d6.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 7db54ba64467af8531138bebce18c069a29222d6
parent dea4dc1c1b2f140a281656f0f58b35625d90d027
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 12:36:49 -0700

increase runtime of shear example

</content>
</entry>
<entry>
<id>dea4dc1c1b2f140a281656f0f58b35625d90d027</id>
<published>2016-04-14T19:24:45Z</published>
<updated>2016-04-14T19:24:45Z</updated>
<title type="text">improve debugging output, save bond-parallel displacement as scalar</title>
<link rel="alternate" href="commit/dea4dc1c1b2f140a281656f0f58b35625d90d027.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit dea4dc1c1b2f140a281656f0f58b35625d90d027
parent 3246bf804bdc996d1bd737dbeb3acadad09fae2d
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 14 Apr 2016 12:24:45 -0700

improve debugging output, save bond-parallel displacement as scalar

</content>
</entry>
<entry>
<id>3246bf804bdc996d1bd737dbeb3acadad09fae2d</id>
<published>2016-04-12T22:03:53Z</published>
<updated>2016-04-12T22:03:53Z</updated>
<title type="text">add debugging information for bond deformation</title>
<link rel="alternate" href="commit/3246bf804bdc996d1bd737dbeb3acadad09fae2d.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 3246bf804bdc996d1bd737dbeb3acadad09fae2d
parent f42ed36e0b3fd01a46ca70e29a11c5ded205f809
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 12 Apr 2016 15:03:53 -0700

add debugging information for bond deformation

</content>
</entry>
<entry>
<id>f42ed36e0b3fd01a46ca70e29a11c5ded205f809</id>
<published>2016-04-05T21:17:57Z</published>
<updated>2016-04-05T21:17:57Z</updated>
<title type="text">include simulation id in file name</title>
<link rel="alternate" href="commit/f42ed36e0b3fd01a46ca70e29a11c5ded205f809.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit f42ed36e0b3fd01a46ca70e29a11c5ded205f809
parent 0098826894734f6e3f5db2e76a707860f42c8c7e
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 14:17:57 -0700

include simulation id in file name

</content>
</entry>
<entry>
<id>0098826894734f6e3f5db2e76a707860f42c8c7e</id>
<published>2016-04-05T21:16:13Z</published>
<updated>2016-04-05T21:16:13Z</updated>
<title type="text">enable shear resisting forces</title>
<link rel="alternate" href="commit/0098826894734f6e3f5db2e76a707860f42c8c7e.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 0098826894734f6e3f5db2e76a707860f42c8c7e
parent bb119cc1c3bf9c0fe083b7137eadd76e39f0d0f5
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 14:16:13 -0700

enable shear resisting forces

</content>
</entry>
<entry>
<id>bb119cc1c3bf9c0fe083b7137eadd76e39f0d0f5</id>
<published>2016-04-05T21:04:40Z</published>
<updated>2016-04-05T21:04:40Z</updated>
<title type="text">add shear test</title>
<link rel="alternate" href="commit/bb119cc1c3bf9c0fe083b7137eadd76e39f0d0f5.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit bb119cc1c3bf9c0fe083b7137eadd76e39f0d0f5
parent 0f0bccee849d4eb219805af002c0877ab961c8d6
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 14:04:40 -0700

add shear test

</content>
</entry>
<entry>
<id>0f0bccee849d4eb219805af002c0877ab961c8d6</id>
<published>2016-04-05T20:57:43Z</published>
<updated>2016-04-05T20:57:43Z</updated>
<title type="text">add parantheses to avoid warning</title>
<link rel="alternate" href="commit/0f0bccee849d4eb219805af002c0877ab961c8d6.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 0f0bccee849d4eb219805af002c0877ab961c8d6
parent 56d818be2914d596c94e0b4968a04f37ca20a759
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 13:57:43 -0700

add parantheses to avoid warning

</content>
</entry>
<entry>
<id>56d818be2914d596c94e0b4968a04f37ca20a759</id>
<published>2016-04-05T20:55:53Z</published>
<updated>2016-04-05T20:55:53Z</updated>
<title type="text">extend elasticity testing</title>
<link rel="alternate" href="commit/56d818be2914d596c94e0b4968a04f37ca20a759.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 56d818be2914d596c94e0b4968a04f37ca20a759
parent d5fcc2684a0bcfda20f1d29e2aab1b830c0190d7
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 13:55:53 -0700

extend elasticity testing

</content>
</entry>
<entry>
<id>d5fcc2684a0bcfda20f1d29e2aab1b830c0190d7</id>
<published>2016-04-05T19:39:25Z</published>
<updated>2016-04-05T19:39:25Z</updated>
<title type="text">version is now a number, disable debug output</title>
<link rel="alternate" href="commit/d5fcc2684a0bcfda20f1d29e2aab1b830c0190d7.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit d5fcc2684a0bcfda20f1d29e2aab1b830c0190d7
parent 067dee70d100c7598d44a8a595e50a32f90c8578
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 12:39:25 -0700

version is now a number, disable debug output

</content>
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<entry>
<id>067dee70d100c7598d44a8a595e50a32f90c8578</id>
<published>2016-04-05T19:35:23Z</published>
<updated>2016-04-05T19:35:23Z</updated>
<title type="text">improve data handling in postprocessing module</title>
<link rel="alternate" href="commit/067dee70d100c7598d44a8a595e50a32f90c8578.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 067dee70d100c7598d44a8a595e50a32f90c8578
parent c75d7fcd51c3d68c8063daf7493815f71331bb39
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 12:35:23 -0700

improve data handling in postprocessing module

</content>
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<entry>
<id>c75d7fcd51c3d68c8063daf7493815f71331bb39</id>
<published>2016-04-05T16:10:31Z</published>
<updated>2016-04-05T16:10:31Z</updated>
<title type="text">write and read simulation status file</title>
<link rel="alternate" href="commit/c75d7fcd51c3d68c8063daf7493815f71331bb39.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit c75d7fcd51c3d68c8063daf7493815f71331bb39
parent c480661f83d878f15281bef803e8a6dbb174b5f6
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue,  5 Apr 2016 09:10:31 -0700

write and read simulation status file

</content>
</entry>
<entry>
<id>c480661f83d878f15281bef803e8a6dbb174b5f6</id>
<published>2016-04-04T22:18:02Z</published>
<updated>2016-04-04T22:18:02Z</updated>
<title type="text">change class name</title>
<link rel="alternate" href="commit/c480661f83d878f15281bef803e8a6dbb174b5f6.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit c480661f83d878f15281bef803e8a6dbb174b5f6
parent faff3bde365e55629dc9c2414e30d2dcbf96d3ef
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Mon,  4 Apr 2016 15:18:02 -0700

change class name

</content>
</entry>
<entry>
<id>faff3bde365e55629dc9c2414e30d2dcbf96d3ef</id>
<published>2016-04-04T22:16:42Z</published>
<updated>2016-04-04T22:16:42Z</updated>
<title type="text">change VERSION to double</title>
<link rel="alternate" href="commit/faff3bde365e55629dc9c2414e30d2dcbf96d3ef.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit faff3bde365e55629dc9c2414e30d2dcbf96d3ef
parent d5eaf125740490f062884823edb1fead98f8efbb
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Mon,  4 Apr 2016 15:16:42 -0700

change VERSION to double

</content>
</entry>
<entry>
<id>d5eaf125740490f062884823edb1fead98f8efbb</id>
<published>2016-03-30T21:54:52Z</published>
<updated>2016-03-30T21:54:52Z</updated>
<title type="text">change help text</title>
<link rel="alternate" href="commit/d5eaf125740490f062884823edb1fead98f8efbb.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit d5eaf125740490f062884823edb1fead98f8efbb
parent 9d76534f6962e6b8b06c3fed5b277320b834e056
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 14:54:52 -0700

change help text

</content>
</entry>
<entry>
<id>9d76534f6962e6b8b06c3fed5b277320b834e056</id>
<published>2016-03-30T21:25:20Z</published>
<updated>2016-03-30T21:25:20Z</updated>
<title type="text">fix arguments</title>
<link rel="alternate" href="commit/9d76534f6962e6b8b06c3fed5b277320b834e056.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 9d76534f6962e6b8b06c3fed5b277320b834e056
parent 94f9fb9eafe08a8193268b2375418756a34d8dbb
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 14:25:20 -0700

fix arguments

</content>
</entry>
<entry>
<id>94f9fb9eafe08a8193268b2375418756a34d8dbb</id>
<published>2016-03-30T21:23:06Z</published>
<updated>2016-03-30T21:23:06Z</updated>
<title type="text">change general data format, read general information in python</title>
<link rel="alternate" href="commit/94f9fb9eafe08a8193268b2375418756a34d8dbb.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 94f9fb9eafe08a8193268b2375418756a34d8dbb
parent 5a85affe06c9ef33083476a69ceddd03b0eb4155
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 14:23:06 -0700

change general data format, read general information in python

</content>
</entry>
<entry>
<id>5a85affe06c9ef33083476a69ceddd03b0eb4155</id>
<published>2016-03-30T21:13:35Z</published>
<updated>2016-03-30T21:13:35Z</updated>
<title type="text">plot translational and rotational energy separately</title>
<link rel="alternate" href="commit/5a85affe06c9ef33083476a69ceddd03b0eb4155.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 5a85affe06c9ef33083476a69ceddd03b0eb4155
parent 5923f961afa2aca4593b8c4004ae6c5816e7250e
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 14:13:35 -0700

plot translational and rotational energy separately

</content>
</entry>
<entry>
<id>5923f961afa2aca4593b8c4004ae6c5816e7250e</id>
<published>2016-03-30T21:08:04Z</published>
<updated>2016-03-30T21:08:04Z</updated>
<title type="text">determine translational kinetic energy</title>
<link rel="alternate" href="commit/5923f961afa2aca4593b8c4004ae6c5816e7250e.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 5923f961afa2aca4593b8c4004ae6c5816e7250e
parent b7c2f91bf3969f60232019e78e937aaa8d894f1f
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 14:08:04 -0700

determine translational kinetic energy

</content>
</entry>
<entry>
<id>b7c2f91bf3969f60232019e78e937aaa8d894f1f</id>
<published>2016-03-30T21:02:24Z</published>
<updated>2016-03-30T21:02:24Z</updated>
<title type="text">update slider plotting routine with new variable names</title>
<link rel="alternate" href="commit/b7c2f91bf3969f60232019e78e937aaa8d894f1f.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit b7c2f91bf3969f60232019e78e937aaa8d894f1f
parent 2186c59a2858b1645b8f09a0cea58e87358aeda0
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 14:02:24 -0700

update slider plotting routine with new variable names

</content>
</entry>
<entry>
<id>2186c59a2858b1645b8f09a0cea58e87358aeda0</id>
<published>2016-03-30T20:56:15Z</published>
<updated>2016-03-30T20:56:15Z</updated>
<title type="text">save plot as PDF</title>
<link rel="alternate" href="commit/2186c59a2858b1645b8f09a0cea58e87358aeda0.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 2186c59a2858b1645b8f09a0cea58e87358aeda0
parent 64ff0d3cc5fff3d9f05502d7db911e75ebc1731d
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 13:56:15 -0700

save plot as PDF

</content>
</entry>
<entry>
<id>64ff0d3cc5fff3d9f05502d7db911e75ebc1731d</id>
<published>2016-03-30T20:51:39Z</published>
<updated>2016-03-30T20:51:39Z</updated>
<title type="text">add outline to plot kinetic energy over time</title>
<link rel="alternate" href="commit/64ff0d3cc5fff3d9f05502d7db911e75ebc1731d.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 64ff0d3cc5fff3d9f05502d7db911e75ebc1731d
parent 18aacc6e97a8d8b41b307dbd97051738a3218759
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 13:51:39 -0700

add outline to plot kinetic energy over time

</content>
</entry>
<entry>
<id>18aacc6e97a8d8b41b307dbd97051738a3218759</id>
<published>2016-03-30T20:37:43Z</published>
<updated>2016-03-30T20:37:43Z</updated>
<title type="text">write all kinematic values to text file</title>
<link rel="alternate" href="commit/18aacc6e97a8d8b41b307dbd97051738a3218759.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 18aacc6e97a8d8b41b307dbd97051738a3218759
parent b315e491a0bfd7a53ef281f41933220f8de8e0c2
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 13:37:43 -0700

write all kinematic values to text file

</content>
</entry>
<entry>
<id>b315e491a0bfd7a53ef281f41933220f8de8e0c2</id>
<published>2016-03-30T17:54:29Z</published>
<updated>2016-03-30T17:54:29Z</updated>
<title type="text">fix function call</title>
<link rel="alternate" href="commit/b315e491a0bfd7a53ef281f41933220f8de8e0c2.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit b315e491a0bfd7a53ef281f41933220f8de8e0c2
parent c1d935d91f4cf966769161facb856ed8c426f859
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 10:54:29 -0700

fix function call

</content>
</entry>
<entry>
<id>c1d935d91f4cf966769161facb856ed8c426f859</id>
<published>2016-03-30T17:51:54Z</published>
<updated>2016-03-30T17:51:54Z</updated>
<title type="text">add viscous and non-viscous damping</title>
<link rel="alternate" href="commit/c1d935d91f4cf966769161facb856ed8c426f859.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit c1d935d91f4cf966769161facb856ed8c426f859
parent 25a1b1a29874237888551abd9d157460aedac79f
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 30 Mar 2016 10:51:54 -0700

add viscous and non-viscous damping

</content>
</entry>
<entry>
<id>25a1b1a29874237888551abd9d157460aedac79f</id>
<published>2016-03-23T22:24:51Z</published>
<updated>2016-03-23T22:24:51Z</updated>
<title type="text">add a descriptive sentence</title>
<link rel="alternate" href="commit/25a1b1a29874237888551abd9d157460aedac79f.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 25a1b1a29874237888551abd9d157460aedac79f
parent 1414f822da9c0bc70985abc65dfbca045da8cae9
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 15:24:51 -0700

add a descriptive sentence

</content>
</entry>
<entry>
<id>1414f822da9c0bc70985abc65dfbca045da8cae9</id>
<published>2016-03-23T22:22:10Z</published>
<updated>2016-03-23T22:22:10Z</updated>
<title type="text">determine bond-parallel and bond-normal deformation inseparate functions</title>
<link rel="alternate" href="commit/1414f822da9c0bc70985abc65dfbca045da8cae9.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 1414f822da9c0bc70985abc65dfbca045da8cae9
parent 9f1ef4954a24c00f095bfafec2afb26292b947b8
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 15:22:10 -0700

determine bond-parallel and bond-normal deformation inseparate functions

</content>
</entry>
<entry>
<id>9f1ef4954a24c00f095bfafec2afb26292b947b8</id>
<published>2016-03-23T20:40:39Z</published>
<updated>2016-03-23T20:40:39Z</updated>
<title type="text">fix contact model parameter names</title>
<link rel="alternate" href="commit/9f1ef4954a24c00f095bfafec2afb26292b947b8.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 9f1ef4954a24c00f095bfafec2afb26292b947b8
parent a4d6a166ba3981c6da4c01752f698f466c21a27e
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:40:39 -0700

fix contact model parameter names

</content>
</entry>
<entry>
<id>a4d6a166ba3981c6da4c01752f698f466c21a27e</id>
<published>2016-03-23T20:36:46Z</published>
<updated>2016-03-23T20:36:46Z</updated>
<title type="text">specify that the stiffness refers to the spring in the Kelvin-Voigt model</title>
<link rel="alternate" href="commit/a4d6a166ba3981c6da4c01752f698f466c21a27e.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit a4d6a166ba3981c6da4c01752f698f466c21a27e
parent 3f9329b2ef127c8ae24bb399ebbf3697fda31011
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:36:46 -0700

specify that the stiffness refers to the spring in the Kelvin-Voigt model

</content>
</entry>
<entry>
<id>3f9329b2ef127c8ae24bb399ebbf3697fda31011</id>
<published>2016-03-23T20:14:31Z</published>
<updated>2016-03-23T20:14:31Z</updated>
<title type="text">add static keyword to allow inclusion in several objects</title>
<link rel="alternate" href="commit/3f9329b2ef127c8ae24bb399ebbf3697fda31011.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 3f9329b2ef127c8ae24bb399ebbf3697fda31011
parent 71351228ef6ae1c6fc4b1205be8552623d683cf1
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:14:31 -0700

add static keyword to allow inclusion in several objects

</content>
</entry>
<entry>
<id>71351228ef6ae1c6fc4b1205be8552623d683cf1</id>
<published>2016-03-23T20:08:30Z</published>
<updated>2016-03-23T20:08:30Z</updated>
<title type="text">remove unused iteration variable</title>
<link rel="alternate" href="commit/71351228ef6ae1c6fc4b1205be8552623d683cf1.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 71351228ef6ae1c6fc4b1205be8552623d683cf1
parent 142e50e1fd1c67f329d92bbbf7bf9ae0e73b32eb
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:08:30 -0700

remove unused iteration variable

</content>
</entry>
<entry>
<id>142e50e1fd1c67f329d92bbbf7bf9ae0e73b32eb</id>
<published>2016-03-23T20:07:43Z</published>
<updated>2016-03-23T20:07:43Z</updated>
<title type="text">fix relative paths</title>
<link rel="alternate" href="commit/142e50e1fd1c67f329d92bbbf7bf9ae0e73b32eb.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 142e50e1fd1c67f329d92bbbf7bf9ae0e73b32eb
parent 8452df073c531a06d60ba75acbc4adde82c63322
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:07:43 -0700

fix relative paths

</content>
</entry>
<entry>
<id>8452df073c531a06d60ba75acbc4adde82c63322</id>
<published>2016-03-23T20:04:43Z</published>
<updated>2016-03-23T20:04:43Z</updated>
<title type="text">put test into subfolder</title>
<link rel="alternate" href="commit/8452df073c531a06d60ba75acbc4adde82c63322.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 8452df073c531a06d60ba75acbc4adde82c63322
parent faa21e62b93f6998ea8a3108b8b58629a8ed8d5d
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:04:43 -0700

put test into subfolder

</content>
</entry>
<entry>
<id>faa21e62b93f6998ea8a3108b8b58629a8ed8d5d</id>
<published>2016-03-23T20:01:08Z</published>
<updated>2016-03-23T20:01:08Z</updated>
<title type="text">put tests in separate folder</title>
<link rel="alternate" href="commit/faa21e62b93f6998ea8a3108b8b58629a8ed8d5d.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit faa21e62b93f6998ea8a3108b8b58629a8ed8d5d
parent c3e0b8d528cae8ad2e8b04ff4ea49ca565c50504
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 13:01:08 -0700

put tests in separate folder

</content>
</entry>
<entry>
<id>c3e0b8d528cae8ad2e8b04ff4ea49ca565c50504</id>
<published>2016-03-23T19:13:49Z</published>
<updated>2016-03-23T19:13:49Z</updated>
<title type="text">add precaution on instabilities with backwards finite differences</title>
<link rel="alternate" href="commit/c3e0b8d528cae8ad2e8b04ff4ea49ca565c50504.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit c3e0b8d528cae8ad2e8b04ff4ea49ca565c50504
parent 2c8a1eb434b536ba5a6bd764c8a40ff975e78a97
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 12:13:49 -0700

add precaution on instabilities with backwards finite differences

</content>
</entry>
<entry>
<id>2c8a1eb434b536ba5a6bd764c8a40ff975e78a97</id>
<published>2016-03-23T19:13:07Z</published>
<updated>2016-03-23T19:13:07Z</updated>
<title type="text">improve stability with central finite differences for displacement</title>
<link rel="alternate" href="commit/2c8a1eb434b536ba5a6bd764c8a40ff975e78a97.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 2c8a1eb434b536ba5a6bd764c8a40ff975e78a97
parent 29dcc40d11391606b585ee8c16d62ffab38d835d
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 12:13:07 -0700

improve stability with central finite differences for displacement

</content>
</entry>
<entry>
<id>29dcc40d11391606b585ee8c16d62ffab38d835d</id>
<published>2016-03-23T19:11:05Z</published>
<updated>2016-03-23T19:11:05Z</updated>
<title type="text">stable behavior with elastic bond model</title>
<link rel="alternate" href="commit/29dcc40d11391606b585ee8c16d62ffab38d835d.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 29dcc40d11391606b585ee8c16d62ffab38d835d
parent 22987b940714da80cd5638c1bd3367747956b4ee
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 12:11:05 -0700

stable behavior with elastic bond model

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<published>2016-03-23T17:55:58Z</published>
<updated>2016-03-23T17:55:58Z</updated>
<title type="text">break long lines (width &gt; 80 char)</title>
<link rel="alternate" href="commit/22987b940714da80cd5638c1bd3367747956b4ee.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 22987b940714da80cd5638c1bd3367747956b4ee
parent 6d61a36522e6fadaddcc2c6a4c4289f7a0add6b5
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 23 Mar 2016 10:55:58 -0700

break long lines (width &gt; 80 char)

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<published>2016-03-22T22:58:39Z</published>
<updated>2016-03-22T22:58:39Z</updated>
<title type="text">remove unnecessary newline</title>
<link rel="alternate" href="commit/6d61a36522e6fadaddcc2c6a4c4289f7a0add6b5.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 6d61a36522e6fadaddcc2c6a4c4289f7a0add6b5
parent 126cdf9bc281c64712cc4cdb5febe0b2f649b456
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 15:58:39 -0700

remove unnecessary newline

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<published>2016-03-22T22:57:53Z</published>
<updated>2016-03-22T22:57:53Z</updated>
<title type="text">remove unused function, initialize force and torque to 0 during initialization</title>
<link rel="alternate" href="commit/126cdf9bc281c64712cc4cdb5febe0b2f649b456.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 126cdf9bc281c64712cc4cdb5febe0b2f649b456
parent c6e2a96799b3fc1b5c926bace6763524480d5417
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 15:57:53 -0700

remove unused function, initialize force and torque to 0 during initialization

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<published>2016-03-22T22:15:23Z</published>
<updated>2016-03-22T22:15:23Z</updated>
<title type="text">add const keywords, suppress some debug output</title>
<link rel="alternate" href="commit/c6e2a96799b3fc1b5c926bace6763524480d5417.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit c6e2a96799b3fc1b5c926bace6763524480d5417
parent 651d6ad14183acc05109edf9fb4569dda244cde1
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 15:15:23 -0700

add const keywords, suppress some debug output

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<published>2016-03-22T21:59:10Z</published>
<updated>2016-03-22T21:59:10Z</updated>
<title type="text">fix index, set velocity for first slider</title>
<link rel="alternate" href="commit/651d6ad14183acc05109edf9fb4569dda244cde1.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 651d6ad14183acc05109edf9fb4569dda244cde1
parent 13fd2f5473280a782faf7f4c94dd56a0ff2a7d41
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 14:59:10 -0700

fix index, set velocity for first slider

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<entry>
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<published>2016-03-22T21:57:50Z</published>
<updated>2016-03-22T21:57:50Z</updated>
<title type="text">set initial distance vector when first finding contacts</title>
<link rel="alternate" href="commit/13fd2f5473280a782faf7f4c94dd56a0ff2a7d41.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 13fd2f5473280a782faf7f4c94dd56a0ff2a7d41
parent bb5690a5dfaf1895126205eceaf2f36aff4155a4
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 14:57:50 -0700

set initial distance vector when first finding contacts

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<entry>
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<published>2016-03-22T21:50:34Z</published>
<updated>2016-03-22T21:50:34Z</updated>
<title type="text">show last output file in status, add debugging output</title>
<link rel="alternate" href="commit/bb5690a5dfaf1895126205eceaf2f36aff4155a4.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit bb5690a5dfaf1895126205eceaf2f36aff4155a4
parent e74cb395a9425ba9819ff606866e77e5ee9dfa93
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 14:50:34 -0700

show last output file in status, add debugging output

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<entry>
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<published>2016-03-22T21:34:12Z</published>
<updated>2016-03-22T21:34:12Z</updated>
<title type="text">fix function calls</title>
<link rel="alternate" href="commit/e74cb395a9425ba9819ff606866e77e5ee9dfa93.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit e74cb395a9425ba9819ff606866e77e5ee9dfa93
parent 9361f609b8753a5ee25000d7ff5269592b8f82ec
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 14:34:12 -0700

fix function calls

</content>
</entry>
<entry>
<id>9361f609b8753a5ee25000d7ff5269592b8f82ec</id>
<published>2016-03-22T21:31:48Z</published>
<updated>2016-03-22T21:31:48Z</updated>
<title type="text">find and save projected future slider position</title>
<link rel="alternate" href="commit/9361f609b8753a5ee25000d7ff5269592b8f82ec.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 9361f609b8753a5ee25000d7ff5269592b8f82ec
parent ed285da822b8be868f38c8cc1419a2d5fa783592
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 14:31:48 -0700

find and save projected future slider position

</content>
</entry>
<entry>
<id>ed285da822b8be868f38c8cc1419a2d5fa783592</id>
<published>2016-03-22T20:26:43Z</published>
<updated>2016-03-22T20:26:43Z</updated>
<title type="text">fix debug output in interaction function</title>
<link rel="alternate" href="commit/ed285da822b8be868f38c8cc1419a2d5fa783592.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit ed285da822b8be868f38c8cc1419a2d5fa783592
parent be3b8690a7ce4f86cc57cc4d3b31a8941b9a76fb
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 13:26:43 -0700

fix debug output in interaction function

</content>
</entry>
<entry>
<id>be3b8690a7ce4f86cc57cc4d3b31a8941b9a76fb</id>
<published>2016-03-22T20:22:47Z</published>
<updated>2016-03-22T20:22:47Z</updated>
<title type="text">fix force sum, disable debug output</title>
<link rel="alternate" href="commit/be3b8690a7ce4f86cc57cc4d3b31a8941b9a76fb.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit be3b8690a7ce4f86cc57cc4d3b31a8941b9a76fb
parent ffce95073aabb7c780a4ccb40e3c16cc8cb35a1e
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 13:22:47 -0700

fix force sum, disable debug output

</content>
</entry>
<entry>
<id>ffce95073aabb7c780a4ccb40e3c16cc8cb35a1e</id>
<published>2016-03-22T20:16:13Z</published>
<updated>2016-03-22T20:16:13Z</updated>
<title type="text">fix divide by zero error, remove object files in source folder</title>
<link rel="alternate" href="commit/ffce95073aabb7c780a4ccb40e3c16cc8cb35a1e.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit ffce95073aabb7c780a4ccb40e3c16cc8cb35a1e
parent 4dec9bb3157cedd9272eb7b2a9938c12ededcd24
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 13:16:13 -0700

fix divide by zero error, remove object files in source folder

</content>
</entry>
<entry>
<id>4dec9bb3157cedd9272eb7b2a9938c12ededcd24</id>
<published>2016-03-22T19:35:47Z</published>
<updated>2016-03-22T19:35:47Z</updated>
<title type="text">initialize slider values in setup_simulation</title>
<link rel="alternate" href="commit/4dec9bb3157cedd9272eb7b2a9938c12ededcd24.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 4dec9bb3157cedd9272eb7b2a9938c12ededcd24
parent 14e8686be58c808ac6a040a280c5f117ff13516f
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 12:35:47 -0700

initialize slider values in setup_simulation

</content>
</entry>
<entry>
<id>14e8686be58c808ac6a040a280c5f117ff13516f</id>
<published>2016-03-22T19:32:22Z</published>
<updated>2016-03-22T19:32:22Z</updated>
<title type="text">set default values for remaining slider parameters</title>
<link rel="alternate" href="commit/14e8686be58c808ac6a040a280c5f117ff13516f.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 14e8686be58c808ac6a040a280c5f117ff13516f
parent 5956528c9e7451c2d932ce45de64d94da384150b
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 12:32:22 -0700

set default values for remaining slider parameters

</content>
</entry>
<entry>
<id>5956528c9e7451c2d932ce45de64d94da384150b</id>
<published>2016-03-22T19:07:58Z</published>
<updated>2016-03-22T19:07:58Z</updated>
<title type="text">pass by reference, not value</title>
<link rel="alternate" href="commit/5956528c9e7451c2d932ce45de64d94da384150b.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 5956528c9e7451c2d932ce45de64d94da384150b
parent a86f1907864ebdac8a032659a16a356964815bd6
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 12:07:58 -0700

pass by reference, not value

</content>
</entry>
<entry>
<id>a86f1907864ebdac8a032659a16a356964815bd6</id>
<published>2016-03-22T19:02:35Z</published>
<updated>2016-03-22T19:02:35Z</updated>
<title type="text">decrease verbosity of debug output</title>
<link rel="alternate" href="commit/a86f1907864ebdac8a032659a16a356964815bd6.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit a86f1907864ebdac8a032659a16a356964815bd6
parent 8e7d2be14d5283bfd8230b8eef858bbbca8c2723
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 12:02:35 -0700

decrease verbosity of debug output

</content>
</entry>
<entry>
<id>8e7d2be14d5283bfd8230b8eef858bbbca8c2723</id>
<published>2016-03-22T18:56:45Z</published>
<updated>2016-03-22T18:56:45Z</updated>
<title type="text">pass sliders as pointers in initialization</title>
<link rel="alternate" href="commit/8e7d2be14d5283bfd8230b8eef858bbbca8c2723.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 8e7d2be14d5283bfd8230b8eef858bbbca8c2723
parent 762b3f6943d2c21d2ef469462691efae7aaa92d5
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 11:56:45 -0700

pass sliders as pointers in initialization

</content>
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<entry>
<id>762b3f6943d2c21d2ef469462691efae7aaa92d5</id>
<published>2016-03-22T18:32:36Z</published>
<updated>2016-03-22T18:32:36Z</updated>
<title type="text">include debug header in main</title>
<link rel="alternate" href="commit/762b3f6943d2c21d2ef469462691efae7aaa92d5.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 762b3f6943d2c21d2ef469462691efae7aaa92d5
parent 98510995b3b02e74f91395782889154b236d517a
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 11:32:36 -0700

include debug header in main

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</entry>
<entry>
<id>98510995b3b02e74f91395782889154b236d517a</id>
<published>2016-03-22T18:30:17Z</published>
<updated>2016-03-22T18:30:17Z</updated>
<title type="text">avoid unused variable warning</title>
<link rel="alternate" href="commit/98510995b3b02e74f91395782889154b236d517a.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 98510995b3b02e74f91395782889154b236d517a
parent 75d805810911e239896f6865ab9af0dc10b2f2ed
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 11:30:17 -0700

avoid unused variable warning

</content>
</entry>
<entry>
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<published>2016-03-22T18:28:12Z</published>
<updated>2016-03-22T18:28:12Z</updated>
<title type="text">add debug information for total slider force balance</title>
<link rel="alternate" href="commit/75d805810911e239896f6865ab9af0dc10b2f2ed.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 75d805810911e239896f6865ab9af0dc10b2f2ed
parent f592a85d991ec58487fb39ba92a7eb3f32b39f75
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Tue, 22 Mar 2016 11:28:12 -0700

add debug information for total slider force balance

</content>
</entry>
<entry>
<id>f592a85d991ec58487fb39ba92a7eb3f32b39f75</id>
<published>2016-03-17T23:56:12Z</published>
<updated>2016-03-17T23:56:12Z</updated>
<title type="text">pass pointer to simulation structure</title>
<link rel="alternate" href="commit/f592a85d991ec58487fb39ba92a7eb3f32b39f75.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit f592a85d991ec58487fb39ba92a7eb3f32b39f75
parent d45ab4c31a7de996f1785ca5d8fb7bc17c06c9dc
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 16:56:12 -0700

pass pointer to simulation structure

</content>
</entry>
<entry>
<id>d45ab4c31a7de996f1785ca5d8fb7bc17c06c9dc</id>
<published>2016-03-17T23:49:15Z</published>
<updated>2016-03-17T23:49:15Z</updated>
<title type="text">pass pointer to structure instead of structure</title>
<link rel="alternate" href="commit/d45ab4c31a7de996f1785ca5d8fb7bc17c06c9dc.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit d45ab4c31a7de996f1785ca5d8fb7bc17c06c9dc
parent 695b94d0b8c81fbbcfca476c06eda313facaf72c
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 16:49:15 -0700

pass pointer to structure instead of structure

</content>
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<entry>
<id>695b94d0b8c81fbbcfca476c06eda313facaf72c</id>
<published>2016-03-17T23:41:37Z</published>
<updated>2016-03-17T23:41:37Z</updated>
<title type="text">save initial conditions, add function to write all output files</title>
<link rel="alternate" href="commit/695b94d0b8c81fbbcfca476c06eda313facaf72c.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 695b94d0b8c81fbbcfca476c06eda313facaf72c
parent 153343f86817343c65a421adafecbb2769977911
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 16:41:37 -0700

save initial conditions, add function to write all output files

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<entry>
<id>153343f86817343c65a421adafecbb2769977911</id>
<published>2016-03-17T23:16:53Z</published>
<updated>2016-03-17T23:16:53Z</updated>
<title type="text">fix vtk file parsing</title>
<link rel="alternate" href="commit/153343f86817343c65a421adafecbb2769977911.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 153343f86817343c65a421adafecbb2769977911
parent aa7f30b3e772dca9dfc4bc189437b5c3acbeb6d3
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 16:16:53 -0700

fix vtk file parsing

</content>
</entry>
<entry>
<id>aa7f30b3e772dca9dfc4bc189437b5c3acbeb6d3</id>
<published>2016-03-17T22:49:54Z</published>
<updated>2016-03-17T22:49:54Z</updated>
<title type="text">fix warnings for output folder creation</title>
<link rel="alternate" href="commit/aa7f30b3e772dca9dfc4bc189437b5c3acbeb6d3.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit aa7f30b3e772dca9dfc4bc189437b5c3acbeb6d3
parent 9d4d792211a8c8e0a94dfa6d22b90e9ed6c7c608
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 15:49:54 -0700

fix warnings for output folder creation

</content>
</entry>
<entry>
<id>9d4d792211a8c8e0a94dfa6d22b90e9ed6c7c608</id>
<published>2016-03-17T22:48:28Z</published>
<updated>2016-03-17T22:48:28Z</updated>
<title type="text">shorten test, do not read .vti files with postprocessing function</title>
<link rel="alternate" href="commit/9d4d792211a8c8e0a94dfa6d22b90e9ed6c7c608.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 9d4d792211a8c8e0a94dfa6d22b90e9ed6c7c608
parent 1e93ae46150e61b7df00a55d2eee080bc43fae4e
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 15:48:28 -0700

shorten test, do not read .vti files with postprocessing function

</content>
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<entry>
<id>1e93ae46150e61b7df00a55d2eee080bc43fae4e</id>
<published>2016-03-17T22:46:26Z</published>
<updated>2016-03-17T22:46:26Z</updated>
<title type="text">write slider information to vtk file</title>
<link rel="alternate" href="commit/1e93ae46150e61b7df00a55d2eee080bc43fae4e.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 1e93ae46150e61b7df00a55d2eee080bc43fae4e
parent a5be42f1e7f01ede7d541668d2dba523bb752881
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 15:46:26 -0700

write slider information to vtk file

</content>
</entry>
<entry>
<id>a5be42f1e7f01ede7d541668d2dba523bb752881</id>
<published>2016-03-17T22:41:44Z</published>
<updated>2016-03-17T22:41:44Z</updated>
<title type="text">add function prototype to header</title>
<link rel="alternate" href="commit/a5be42f1e7f01ede7d541668d2dba523bb752881.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit a5be42f1e7f01ede7d541668d2dba523bb752881
parent 61541ba4e7dc9660c1dd91aba87dc25c282682c7
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 15:41:44 -0700

add function prototype to header

</content>
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<entry>
<id>61541ba4e7dc9660c1dd91aba87dc25c282682c7</id>
<published>2016-03-17T22:38:43Z</published>
<updated>2016-03-17T22:38:43Z</updated>
<title type="text">add function to write to VTK files</title>
<link rel="alternate" href="commit/61541ba4e7dc9660c1dd91aba87dc25c282682c7.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 61541ba4e7dc9660c1dd91aba87dc25c282682c7
parent 3008c9edbbaac56bcfe215ade860e106f79127b8
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 15:38:43 -0700

add function to write to VTK files

</content>
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<entry>
<id>3008c9edbbaac56bcfe215ade860e106f79127b8</id>
<published>2016-03-17T21:08:44Z</published>
<updated>2016-03-17T21:08:44Z</updated>
<title type="text">update visualization call in makefile</title>
<link rel="alternate" href="commit/3008c9edbbaac56bcfe215ade860e106f79127b8.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 3008c9edbbaac56bcfe215ade860e106f79127b8
parent a6eccd98dafded3ca40fdbe13dfa3b8727d90e11
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 14:08:44 -0700

update visualization call in makefile

</content>
</entry>
<entry>
<id>a6eccd98dafded3ca40fdbe13dfa3b8727d90e11</id>
<published>2016-03-17T21:07:21Z</published>
<updated>2016-03-17T21:07:21Z</updated>
<title type="text">fix parsing of args without option</title>
<link rel="alternate" href="commit/a6eccd98dafded3ca40fdbe13dfa3b8727d90e11.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit a6eccd98dafded3ca40fdbe13dfa3b8727d90e11
parent 1a2317b2dc0f603bfe2ace1f0d5d93b40efd6a57
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 14:07:21 -0700

fix parsing of args without option

</content>
</entry>
<entry>
<id>1a2317b2dc0f603bfe2ace1f0d5d93b40efd6a57</id>
<published>2016-03-17T20:54:37Z</published>
<updated>2016-03-17T20:54:37Z</updated>
<title type="text">parse options sensibly</title>
<link rel="alternate" href="commit/1a2317b2dc0f603bfe2ace1f0d5d93b40efd6a57.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 1a2317b2dc0f603bfe2ace1f0d5d93b40efd6a57
parent 9a7c3f858d084821a9aba2343c74f8607fbffed2
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 13:54:37 -0700

parse options sensibly

</content>
</entry>
<entry>
<id>9a7c3f858d084821a9aba2343c74f8607fbffed2</id>
<published>2016-03-17T20:07:19Z</published>
<updated>2016-03-17T20:07:19Z</updated>
<title type="text">rename postprocessing script, restructure test</title>
<link rel="alternate" href="commit/9a7c3f858d084821a9aba2343c74f8607fbffed2.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 9a7c3f858d084821a9aba2343c74f8607fbffed2
parent 5420c99b87bf0d3a043aaf7d8ad2ba6dc972bfda
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 13:07:19 -0700

rename postprocessing script, restructure test

</content>
</entry>
<entry>
<id>5420c99b87bf0d3a043aaf7d8ad2ba6dc972bfda</id>
<published>2016-03-17T18:25:26Z</published>
<updated>2016-03-17T18:25:26Z</updated>
<title type="text">do not open png files, add perturbation</title>
<link rel="alternate" href="commit/5420c99b87bf0d3a043aaf7d8ad2ba6dc972bfda.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 5420c99b87bf0d3a043aaf7d8ad2ba6dc972bfda
parent 2148944e1fe65b0eec1d0179e0ec41eb21f54eca
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 11:25:26 -0700

do not open png files, add perturbation

</content>
</entry>
<entry>
<id>2148944e1fe65b0eec1d0179e0ec41eb21f54eca</id>
<published>2016-03-17T18:01:35Z</published>
<updated>2016-03-17T18:01:35Z</updated>
<title type="text">fix output file number</title>
<link rel="alternate" href="commit/2148944e1fe65b0eec1d0179e0ec41eb21f54eca.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 2148944e1fe65b0eec1d0179e0ec41eb21f54eca
parent ff88f8d48e99c57f52f22471765a1bd9ad2e00fc
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 11:01:35 -0700

fix output file number

</content>
</entry>
<entry>
<id>ff88f8d48e99c57f52f22471765a1bd9ad2e00fc</id>
<published>2016-03-17T18:00:28Z</published>
<updated>2016-03-17T18:00:28Z</updated>
<title type="text">fix output files, add simple output visualization script</title>
<link rel="alternate" href="commit/ff88f8d48e99c57f52f22471765a1bd9ad2e00fc.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit ff88f8d48e99c57f52f22471765a1bd9ad2e00fc
parent 44ac43e2f25e201fcc9f6ee771ffc4de2819ba7a
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 11:00:28 -0700

fix output files, add simple output visualization script

</content>
</entry>
<entry>
<id>44ac43e2f25e201fcc9f6ee771ffc4de2819ba7a</id>
<published>2016-03-17T17:19:55Z</published>
<updated>2016-03-17T17:19:55Z</updated>
<title type="text">fix output folder creation, file write</title>
<link rel="alternate" href="commit/44ac43e2f25e201fcc9f6ee771ffc4de2819ba7a.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 44ac43e2f25e201fcc9f6ee771ffc4de2819ba7a
parent 835f19fe0b2edc041905949cdd48466a743ed440
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 10:19:55 -0700

fix output folder creation, file write

</content>
</entry>
<entry>
<id>835f19fe0b2edc041905949cdd48466a743ed440</id>
<published>2016-03-17T16:27:09Z</published>
<updated>2016-03-17T16:27:09Z</updated>
<title type="text">fix sprintf calls, improve error messages</title>
<link rel="alternate" href="commit/835f19fe0b2edc041905949cdd48466a743ed440.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 835f19fe0b2edc041905949cdd48466a743ed440
parent 0f79de37df00ace7285e5b445d648a90a27d6def
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Thu, 17 Mar 2016 09:27:09 -0700

fix sprintf calls, improve error messages

mkdir is not successful

</content>
</entry>
<entry>
<id>0f79de37df00ace7285e5b445d648a90a27d6def</id>
<published>2016-03-16T23:05:11Z</published>
<updated>2016-03-16T23:05:11Z</updated>
<title type="text">write slider positions to file, todo: add other params</title>
<link rel="alternate" href="commit/0f79de37df00ace7285e5b445d648a90a27d6def.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 0f79de37df00ace7285e5b445d648a90a27d6def
parent bd4fc9c6e32224ee34ffce1e727317cc3b8375f5
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 16 Mar 2016 16:05:11 -0700

write slider positions to file, todo: add other params

</content>
</entry>
<entry>
<id>bd4fc9c6e32224ee34ffce1e727317cc3b8375f5</id>
<published>2016-03-16T22:39:54Z</published>
<updated>2016-03-16T22:39:54Z</updated>
<title type="text">show status during verbose runs, define bond stiffnesses, set temporal parameters</title>
<link rel="alternate" href="commit/bd4fc9c6e32224ee34ffce1e727317cc3b8375f5.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit bd4fc9c6e32224ee34ffce1e727317cc3b8375f5
parent 5d6e81a04a1e2fe6151185a4afeab15f67fc41b7
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 16 Mar 2016 15:39:54 -0700

show status during verbose runs, define bond stiffnesses, set temporal parameters

</content>
</entry>
<entry>
<id>5d6e81a04a1e2fe6151185a4afeab15f67fc41b7</id>
<published>2016-03-16T22:01:22Z</published>
<updated>2016-03-16T22:01:22Z</updated>
<title type="text">add command line arguments for help and version</title>
<link rel="alternate" href="commit/5d6e81a04a1e2fe6151185a4afeab15f67fc41b7.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 5d6e81a04a1e2fe6151185a4afeab15f67fc41b7
parent f7efea53cfef992b109b9f461eecbd5d6fa0edac
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 16 Mar 2016 15:01:22 -0700

add command line arguments for help and version

</content>
</entry>
<entry>
<id>f7efea53cfef992b109b9f461eecbd5d6fa0edac</id>
<published>2016-03-16T21:40:09Z</published>
<updated>2016-03-16T21:40:09Z</updated>
<title type="text">add slider interaction to main loop</title>
<link rel="alternate" href="commit/f7efea53cfef992b109b9f461eecbd5d6fa0edac.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit f7efea53cfef992b109b9f461eecbd5d6fa0edac
parent 9a4d741751100153ad6ddfd98853e0a51c8d390f
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 16 Mar 2016 14:40:09 -0700

add slider interaction to main loop

</content>
</entry>
<entry>
<id>9a4d741751100153ad6ddfd98853e0a51c8d390f</id>
<published>2016-03-16T21:39:55Z</published>
<updated>2016-03-16T21:39:55Z</updated>
<title type="text">moved debug header file</title>
<link rel="alternate" href="commit/9a4d741751100153ad6ddfd98853e0a51c8d390f.gph" />
<author>
<name>Anders Damsgaard</name>
<email>[email protected]</email>
</author>
<content type="text">commit 9a4d741751100153ad6ddfd98853e0a51c8d390f
parent 2cbbdd605da03594e01af13f38eb937c7ee4a0ac
Author: Anders Damsgaard &lt;[email protected]&gt;
Date:   Wed, 16 Mar 2016 14:39:55 -0700

moved debug header file

</content>
</entry>
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